Protein

View in Explore
Genbank accession
YP_006560834.1 [GenBank]
Protein name
central tail fiber J
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGGGKASTPTLLDDNLKSKQFYRVLDLISEGPIAGPVDQEHLSSFKLNKTPVTDANGNVSINGVSVAWRPGSETQEPINGFSAIEATTIVNTEVTYDTPLVRTITDNDVTRVRFNVGVTGLVEQDTKGNQKNTSVTLVLESRTGSSGWVIEKTVTITGKISGEYLEAHLIDAPETKPFDIRVRRITPDSTSDLLSNGTIWNSYSEITDDNLSYPFSAIAGAVIDRDQYTDTPSRTYHLRGLIVDVPDNYDPIARTYSGLWTGGFKKACTNNPAWLFRELARNTRFGLAKRAGYIDIDDGALYVLSQYCDQLVNDGYGGQEPRMTLNAYITEQVSARDILDKIASMFRGIALWDGMRLSVMLDAPQDPIATITNANVVDGEFKRSSVKRSEKYNAVVVSWTDPDNGWEQVKEYVSDDEMIARGNYNETTIEAFGCTSRGQAWRAGKWLLETAKRESSRLSFQMARDAIHFTPGDIVEIMDNNYAGARLGGRIMSHAGNRITVDAVDSSLISDGDTMSIMGSNGKFVKYEIGSISGNVVTLKTTPAWVRDGTVFAISTSNVSTRLFRILSIAETDNNSVYSITASQHDPNKQVIVDEGAVFEVPNDTLNGYRVPNVENLRIINTNSETVQVTATWETATTTKKLMFELYVYNDEGKVVAQYETDQFRYDFYGLEAGSYTLGVRGRNENGMKGAETQVNMVIGAPPAPSGVVWTPGLFSADLVPVMRITATTDTSFEFWYSGQNQIVNPDDIEDQAQFLGRSNQWTLHGLQADKTYYVYVRTKNAFGVSEFVEASGQASSDIPGMIELIDEHIRESDAFKNVQQGVNTNLDGIMSNALANHGTVEHQYQQYGEVRADILVVKTTVATAEQGLADLSTYVQAQIGPEGELTSAVNQKMTAEVNSDGTAKASYTLNMGIVRNGVKYNTGFGMSIEPDGSSYKSTVVFAADQFGIYSGSDPGNYTAAFFVYNGQVFIRDALIQDGSISNAKIGNYIQSNNFVAGSTGWRIDKNGNAELHGKLYADSGQFAFNGENNTVVINGNGVTVNLPGGGRVVVGRW
Physico‐chemical
properties
protein length:1056 AA
molecular weight: 115450,91430 Da
isoelectric point:4,82179
aromaticity:0,09091
hydropathy:-0,32500

Domains

Domains [InterPro]
IPR053171
Unmapped
1–876
IPR053171 IPR015406
DC_0023
STR
1–1055
DC_0023
IPR055385
ATT
87–211
IPR055385 IPR032876 IPR055383 IPR057587
IPR003961
STR
613–691
IPR003961 IPR003961
IPR036116
STR
617–792
IPR036116
YP_006560834.1
1 1056
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 1-86 | ATT 87-211 | STR 212-331 | ATT 332-494 | STR 495-705 | ATT 706-809 | STR 810-1055 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006560834.1
1 1056
Domain Start End Length (AA) Confidence
N-terminal 1 529 529 0,7692
Central domain 530 994 466 0,0861
C-terminal 995 1056 61 0,4894
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-529
Central
530-994
C-terminal
995-1056

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SosS_Oslo
[NCBI] 		1168549 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006560834.1 [NCBI]
Genbank nucleotide accession
NC_018279 [NCBI]
CDS location
range 18563 -> 21733
strand +
CDS
ATGTCTTCAGGTGGCGGCAAAGCATCAACCCCAACCCTTCTTGACGATAACCTCAAATCAAAACAATTTTACCGGGTGCTCGACCTTATCAGCGAGGGGCCAATTGCAGGTCCGGTAGACCAGGAGCACCTGTCATCATTCAAACTGAACAAGACGCCAGTCACCGATGCAAACGGAAACGTCAGCATCAACGGCGTCAGCGTGGCATGGAGACCCGGCTCGGAAACTCAGGAGCCGATTAACGGCTTCTCGGCAATCGAGGCGACAACCATCGTCAACACAGAGGTGACCTACGATACGCCGCTGGTGCGTACCATTACGGATAATGACGTGACCCGCGTTCGGTTTAACGTTGGCGTCACCGGGCTTGTTGAGCAGGACACCAAAGGCAACCAGAAAAACACCTCTGTAACGCTGGTGCTTGAAAGTCGCACCGGTTCATCTGGGTGGGTAATCGAAAAGACCGTCACCATCACAGGGAAAATCTCAGGTGAATATCTTGAAGCACACCTGATTGACGCGCCGGAAACTAAACCGTTCGATATCCGTGTGCGTCGAATTACGCCGGACAGCACAAGTGATTTGTTGTCAAACGGCACCATCTGGAACAGCTACAGCGAGATCACCGACGACAACCTTAGCTATCCGTTCTCCGCCATTGCGGGTGCAGTTATTGACCGTGACCAATACACCGACACCCCTAGTCGCACATACCATCTTCGCGGCCTGATTGTGGACGTTCCTGACAACTACGATCCGATAGCCAGAACTTACTCAGGGCTATGGACTGGCGGATTCAAAAAAGCGTGTACTAACAACCCGGCGTGGCTGTTCCGTGAACTGGCGAGGAATACCCGTTTTGGCCTGGCGAAACGTGCCGGTTATATCGATATAGATGACGGTGCGCTGTACGTCCTCTCACAGTATTGCGATCAGCTTGTTAACGATGGCTACGGCGGGCAGGAACCAAGGATGACGCTGAATGCCTATATTACCGAGCAGGTGAGTGCGCGTGACATTCTCGACAAGATAGCGAGCATGTTTCGCGGTATAGCACTGTGGGACGGGATGCGACTGTCTGTCATGCTGGATGCGCCACAGGACCCGATTGCAACAATCACGAATGCTAACGTGGTTGATGGCGAGTTCAAGCGTAGCTCCGTGAAGCGTTCAGAGAAATACAATGCCGTTGTTGTGTCATGGACTGATCCGGATAACGGGTGGGAGCAGGTAAAAGAATATGTTTCCGACGATGAGATGATCGCTCGAGGAAACTACAACGAAACAACAATTGAAGCATTCGGTTGCACGTCTCGCGGTCAGGCATGGCGCGCTGGGAAATGGCTTCTTGAAACGGCGAAACGGGAAAGCAGCAGACTGTCTTTCCAGATGGCGCGCGATGCTATCCACTTCACGCCGGGTGATATCGTTGAAATCATGGATAACAACTATGCTGGTGCGCGTCTTGGTGGCCGCATTATGTCGCATGCAGGTAACAGAATTACCGTGGATGCGGTTGATTCATCCCTGATATCAGACGGCGACACCATGTCAATCATGGGTAGCAACGGGAAGTTCGTTAAATACGAGATTGGCAGCATTTCCGGCAACGTGGTGACGCTGAAAACGACTCCAGCATGGGTTCGTGACGGTACTGTATTTGCCATATCTACCAGTAACGTTTCTACCAGACTATTCCGCATCCTTAGCATTGCAGAGACCGATAACAACTCGGTCTACAGCATCACTGCATCACAACATGACCCGAACAAACAGGTCATTGTTGATGAAGGTGCCGTGTTTGAAGTTCCCAACGATACACTGAACGGGTATCGAGTGCCGAACGTAGAGAACCTGCGCATCATCAACACCAACTCTGAGACTGTTCAGGTTACTGCTACATGGGAGACAGCTACCACCACCAAAAAACTGATGTTCGAACTGTACGTGTACAACGATGAAGGCAAGGTTGTTGCTCAGTATGAAACAGACCAGTTCCGCTACGATTTCTACGGGCTGGAAGCAGGGAGTTACACTCTCGGCGTACGCGGTCGCAACGAAAACGGAATGAAAGGGGCGGAGACGCAGGTAAACATGGTTATTGGTGCGCCGCCAGCGCCATCCGGCGTTGTCTGGACTCCCGGCCTGTTCTCTGCTGACCTTGTGCCTGTCATGCGCATTACGGCAACGACAGACACATCGTTTGAGTTCTGGTACTCCGGGCAGAACCAGATTGTCAATCCTGACGATATTGAAGACCAGGCTCAGTTCCTCGGGCGCTCTAACCAGTGGACGCTTCATGGTCTACAGGCTGATAAGACGTATTACGTTTATGTCCGCACCAAAAATGCTTTCGGGGTATCGGAGTTCGTTGAGGCATCAGGTCAGGCGTCATCAGACATTCCTGGAATGATAGAACTCATTGATGAGCATATCCGCGAATCAGATGCGTTTAAAAATGTTCAGCAGGGTGTCAACACCAACCTGGACGGTATCATGTCGAACGCGCTGGCGAACCACGGAACCGTTGAGCACCAGTATCAGCAATATGGGGAGGTTCGCGCCGACATCCTTGTTGTGAAAACAACAGTCGCTACTGCCGAGCAGGGGCTCGCCGATCTTTCCACTTACGTACAGGCACAAATAGGCCCTGAAGGAGAGTTAACCTCAGCCGTAAATCAGAAAATGACCGCTGAGGTCAACAGTGATGGCACAGCTAAAGCATCTTACACACTCAATATGGGGATTGTCAGGAACGGTGTGAAATACAATACCGGTTTCGGCATGTCCATTGAGCCTGACGGTAGCTCATACAAATCAACAGTGGTTTTTGCCGCAGATCAGTTCGGCATTTATTCCGGAAGTGATCCTGGAAACTATACCGCTGCGTTTTTCGTCTATAACGGACAGGTATTTATCCGTGATGCGTTAATTCAGGATGGCAGCATTAGCAATGCCAAAATTGGTAATTACATCCAGTCGAATAACTTCGTTGCGGGTTCAACTGGCTGGCGCATTGATAAAAATGGAAATGCTGAATTGCATGGCAAACTTTACGCTGACAGTGGCCAGTTTGCCTTTAACGGTGAAAACAACACGGTTGTTATAAATGGCAATGGCGTCACGGTAAATCTACCGGGTGGCGGGCGCGTTGTCGTTGGGCGATGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d7120d60d1cec9cd51767f4cbb65fe3c4112bb364e8b50515788c39da69cfca7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8132
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of two new Salmonella bacteriophages: vB_SosS_Oslo and vB_SemP_Emek Ho,N., Lingohr,E.J., Villegas,A., Cole,L. and Kropinski,A.M. 2012 — GenBank