Protein

View in Explore
Genbank accession
YP_010749088.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVISLESMQIARKHQIFEIEVITGKQGGVAYGADIDYATNAVTGQTQKTLPAVLRDAGFSPVSWDFSTGGTLTANDRDKVVYDPVSKTWYSYTGTLPVVVPASFNPVGNANWRPQTDPDLRNDLSSTDNATLGDAMVGVRQPFTDAVGRTQHDKNREVVSVLDFYLGTDPDYTNALNRALTASNGVLVPQGEYSTSLLSHPTCSLFGTGGGVLKQSNDSGNHLIFDKPAGGLLSTLSIVGNKATDSTQGQQVSFAGGQDVTIKGIDFKNAKGTGFSLIAYPSDGGPSGYIVSGIRGDYSGYATNKTAGCVLFESASNTIINDVIARNYPQFGAVELKTDAKCNVVSGVIGQSCQHVVYNGTKTTNAPSSNIISNVVANNAKYAAVVAGKGSGNLVTNVVADYSSSEATQAHGVTLQGNYNAADNILMVGCSGTNSLGQKQTATSIRFLNGASNNYASVFPMYSASGVVTLETGTTRNFVEVKHPGPKNSLLSSLSTITGVSSIDGTTTSNVVHAPAIGQYIGSMSGRFEWFTKYIDTSALPFVTADKFRLISDGATSLAIGGGTTSQIKLLTSDGTFGTISLVDGNLRLASAASAFIQIAPTAITPSSANTVTIGSASLALSGGFTQTAFTVTSDERAKTLPLELTDAMLDAWAEVNLVQYKYLDRVAEKGEDAARWHFGVVAQRAIEAFTRHGLDATKYGFLCYDKWEASPEIIDEESGEVLTKATAAGERYGIRYDEVLILEAALQRRKAAQLEKRIIALETLVATLTNS
Physico‐chemical
properties
protein length:778 AA
molecular weight: 81966,48810 Da
isoelectric point:5,36471
aromaticity:0,07841
hydropathy:-0,09460

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–133
G3DSA:2.10.10.80 IPR012334 cd10144
DC_0790
STR
67–200
DC_0790 IPR030392
IPR011050
STR
175–440
IPR011050 IPR030392 Coil
cd10144
CHP
640–750
cd10144
IPR036388
RBD
641–767
IPR036388
YP_010749088.1
1 778
Architecture
ATT
STR
RBD
ATT 65-133 | STR 134-640 | RBD 641-772 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010749088.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 177 177 0,9941
Central domain 178 536 360 0,9837
C-terminal 537 778 241 0,9503
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-177
Central
178-536
C-terminal
537-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_fPoEco01
[NCBI] 		2762429 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010749088.1 [NCBI]
Genbank nucleotide accession
NC_073317 [NCBI]
CDS location
range 22213 -> 24549
strand +
CDS
ATGTCAAGCGGATGTGGTGATGTTATAAGTCTGGAGTCGATGCAAATCGCACGTAAACACCAGATTTTCGAAATAGAGGTTATCACCGGTAAACAGGGCGGCGTTGCGTACGGTGCTGATATTGATTACGCGACAAATGCCGTTACAGGGCAGACCCAAAAGACGTTACCAGCCGTGTTGCGTGACGCTGGTTTTTCTCCGGTGTCATGGGACTTTTCCACTGGTGGTACGTTAACCGCTAATGACCGCGACAAAGTGGTGTATGACCCTGTAAGCAAGACGTGGTACTCGTATACCGGGACTCTGCCGGTTGTTGTCCCCGCATCGTTTAACCCGGTTGGTAACGCTAACTGGAGGCCGCAGACTGACCCGGATTTGCGCAATGATTTATCCAGCACAGACAATGCGACATTAGGTGATGCCATGGTCGGCGTCCGACAACCATTTACCGACGCTGTCGGCAGGACGCAACACGATAAAAATAGAGAAGTAGTTTCCGTTCTGGACTTCTATTTAGGTACTGACCCTGATTACACAAACGCCCTTAACCGAGCGCTTACAGCTAGTAACGGGGTGCTTGTACCGCAAGGGGAGTATAGTACGTCGCTACTCTCCCACCCGACATGCTCTCTATTCGGAACAGGGGGTGGGGTTTTAAAACAATCAAACGATTCTGGAAACCACTTAATCTTTGATAAACCTGCAGGAGGGCTACTTAGCACCCTGAGTATTGTAGGAAATAAGGCAACGGACTCCACACAGGGTCAGCAGGTTTCCTTCGCCGGTGGGCAGGACGTTACTATTAAAGGTATTGATTTTAAAAATGCAAAGGGAACTGGATTTAGTTTAATAGCATACCCTAGTGATGGGGGTCCGTCTGGATACATTGTAAGCGGCATACGGGGCGACTACTCCGGGTATGCTACAAATAAAACAGCGGGGTGCGTGCTGTTTGAGTCCGCAAGTAATACTATAATCAACGATGTTATCGCCCGAAACTACCCCCAATTCGGGGCGGTTGAGTTGAAAACAGATGCTAAATGTAATGTTGTTAGTGGCGTCATTGGGCAAAGCTGTCAGCACGTTGTTTATAATGGCACCAAGACGACCAATGCCCCTAGCAGTAATATTATCAGTAATGTTGTTGCTAATAACGCTAAGTATGCCGCTGTGGTCGCCGGCAAGGGTTCAGGTAATCTGGTGACAAATGTTGTAGCTGATTACTCCTCCTCCGAGGCCACGCAAGCCCACGGCGTTACATTACAAGGCAACTATAATGCCGCTGATAATATTCTAATGGTTGGGTGCAGCGGAACTAATAGTTTAGGGCAAAAGCAAACCGCGACTTCTATTAGGTTTTTAAACGGAGCTAGTAATAACTACGCATCGGTTTTCCCTATGTATAGTGCTTCCGGGGTTGTTACACTAGAGACAGGGACTACCCGTAACTTTGTGGAAGTAAAGCACCCTGGACCCAAGAACAGTCTTCTTAGTTCACTATCTACTATAACCGGGGTCTCTAGCATTGATGGTACTACCACCAGTAACGTGGTACACGCCCCCGCTATAGGACAATACATAGGGTCCATGTCCGGTAGGTTCGAGTGGTTCACTAAGTATATAGATACTTCTGCATTGCCTTTTGTGACAGCTGATAAATTCAGACTAATTTCCGATGGGGCTACATCTTTGGCTATTGGTGGAGGTACGACCTCTCAGATAAAATTACTCACATCTGATGGTACTTTTGGAACTATTTCTCTGGTTGATGGTAATTTACGCTTAGCCTCTGCCGCATCGGCGTTTATTCAAATAGCCCCGACGGCTATTACACCATCCAGTGCAAACACCGTCACTATCGGGTCGGCAAGTCTCGCTTTGTCCGGCGGATTCACTCAAACAGCGTTTACGGTTACGTCTGACGAGAGAGCCAAGACACTACCCCTGGAATTAACTGACGCTATGTTAGACGCTTGGGCTGAAGTTAATTTAGTTCAATATAAGTACCTGGATAGGGTTGCAGAGAAGGGCGAGGATGCAGCTAGGTGGCACTTTGGAGTAGTAGCCCAACGAGCAATTGAGGCGTTTACCCGGCACGGGTTGGACGCGACTAAGTACGGTTTCCTGTGCTACGATAAGTGGGAAGCGTCTCCGGAAATTATTGATGAGGAATCTGGGGAAGTATTAACAAAAGCTACGGCGGCAGGGGAGCGGTATGGTATTCGTTATGATGAGGTATTGATATTAGAGGCTGCGTTACAGCGACGTAAAGCAGCTCAGTTAGAGAAAAGGATTATAGCGCTTGAGACATTAGTGGCTACCCTGACAAACAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79a9bc8e97944cb17181827359aad5eabdaf3547750944081ddaa3293cf6d0e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7896
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of six Escherichia phages belonging to Genus Kagunavirus Patpatia,S., Wicklund,A., Skurnik,M. and Kiljunen,S. 2024-10-19 — GenBank