Protein

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Genbank accession
YP_009804734.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSQVCVVTATGEYVCGTGLWNGPKPGDPNTSDILITAVPAYGGIDVNWTWPDTYPEAVAYTTIYRGTTPDFMAATTHVAAAAGNFFYDKTTNEFPTAYYYWILLTSIYGTKSELIGPATTVAKPRIDQMLEDLTGKIDNGVLAPALKNDIARIELNALGITQEILARQSEDEALGAQVNVVGAHSDETRALLQEEVLARTTQGSAFVSTVNTLWAETSSGLASIQVQQTALSNEVQAMAEQLTRLETQVGEDLAQVLQTMQTKIDVVDGKVVAIGALYTAQVNVNGLIGGFGVYNDGTTVEAGFDVDRFWVGRTNGNKRKPFIIENDIVYIDDAAIRQLTFSKLRDESGSFIVENGKIRADYLQVDSLIVNQAQSLNYVAGVSGWVLRANGDLEFNGPAAGGGRLTMTNRLIQVFDSNNVLRVRLGIWG
Physico‐chemical
properties
protein length:429 AA
molecular weight: 46383,58310 Da
isoelectric point:4,55004
aromaticity:0,08392
hydropathy:-0,03939

Domains

Domains [InterPro]
DC_0416
STR
5–429
DC_0416
IPR013783
STR
32–115
IPR013783 IPR053171
Coil
Unmapped
228–248
Coil IPR015406
YP_009804734.1
1 429
Architecture
STR
STR 5-429
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phCDa
[NCBI] 		2268587 Uroviricota > Caudoviricetes > Schitoviridae > Shizishanvirus phCDa >
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009804734.1 [NCBI]
Genbank nucleotide accession
NC_048003.1 [NCBI]
CDS location
range 65896 -> 67185
strand -
CDS
ATGAGCCAAGTTTGTGTAGTTACCGCAACAGGCGAATACGTCTGCGGTACTGGGCTGTGGAATGGCCCAAAGCCGGGTGATCCGAACACTTCGGACATTCTTATTACGGCTGTGCCTGCTTATGGTGGTATCGACGTAAACTGGACGTGGCCCGACACCTACCCGGAAGCTGTTGCGTACACCACGATCTATCGCGGCACTACGCCAGACTTTATGGCAGCTACCACACATGTAGCGGCAGCTGCGGGCAACTTCTTCTACGACAAGACAACCAACGAGTTTCCGACTGCTTATTACTACTGGATTCTCCTGACTTCGATCTACGGCACTAAATCGGAACTGATCGGACCGGCAACTACAGTAGCGAAGCCCCGTATCGATCAGATGCTGGAAGACCTCACCGGTAAGATCGACAACGGTGTTTTGGCTCCTGCCCTCAAAAATGATATTGCCCGCATCGAATTGAACGCCTTGGGTATTACTCAGGAGATTTTGGCTCGGCAGAGTGAGGACGAGGCCTTAGGGGCACAAGTAAACGTAGTAGGTGCGCATTCCGATGAAACGCGGGCATTGCTGCAGGAAGAAGTGCTTGCGCGCACCACGCAGGGCAGCGCCTTTGTTTCTACGGTCAACACCTTGTGGGCTGAGACCAGCAGCGGACTTGCGTCTATTCAGGTGCAGCAAACTGCTTTGTCCAACGAAGTGCAGGCGATGGCCGAGCAACTCACACGACTGGAGACCCAAGTAGGCGAAGACCTAGCCCAGGTACTACAAACCATGCAAACCAAGATCGACGTGGTCGATGGCAAGGTTGTGGCTATTGGTGCGCTATACACAGCACAAGTGAACGTGAACGGTTTGATTGGTGGCTTCGGTGTTTACAACGATGGCACCACGGTAGAAGCAGGGTTTGATGTCGACCGGTTTTGGGTTGGCCGCACTAATGGCAATAAGCGTAAACCCTTCATCATCGAGAACGACATTGTCTATATCGATGATGCGGCGATTCGTCAGTTGACCTTCAGCAAGCTTCGAGACGAATCTGGTTCGTTCATTGTGGAAAACGGCAAGATCCGTGCTGATTACCTTCAAGTTGACTCCTTGATTGTAAACCAGGCCCAATCTTTGAATTACGTTGCAGGTGTATCCGGTTGGGTGCTGCGCGCCAACGGCGACTTAGAATTCAACGGTCCTGCTGCCGGGGGTGGCCGTTTGACTATGACTAACCGCCTGATTCAGGTATTTGACAGCAACAACGTACTGCGCGTACGCCTGGGTATTTGGGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
720b53844862c2d657a6ddd360ca855096592c45ae5ceabfb17cea94f27abad3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7666
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of a novel Pseudomonas phage phCDa Chen,C., Lu,D., Wang,J. and Fu,R. 2022-07-23 — GenBank