Protein

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Genbank accession
AFH19806.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,70
Protein sequence
MVRTLQRRTIAGGSIPNTLQLKVKLSPSGRALFATGNPGTGMYRKVWNGSQYIDASGADHAVTSYVVAWTADETYQVAIGSGSPGVTSIYLRSFNIATGANSVLSTGNNVLGNATAVLGIERIVGDYFIAYTQSRIIVFTINRTTNTLVVLSNTVSTINTIRGIAGDGQSNVIVVHSGPTNANNGFQSYSVDLSTGVLTPIGSQQVQGLGRISGFDFRSGKVLSYSRYNLNEVMFLQLNGSSALVPVPGFSALTLQTNMTAAAAQTTTAFMHLAFEETEITYLSSNDPGQFFSADIATLSQSGFAPPANLPTGRTNAIDYGEIGSRTYASYSENGKIMAFTFPFAAALTGVYVFSEVDDPEISLIPVAPMAEATLDLAINDSAQFIPVAPMADATVDAATNENTAFLADAPMADAFVVLTKLVAVDFLAQAPMASAFVQFDNTQPSELVAVAPMADAFIRDRGNKRRGVMVVQTL
Physico‐chemical
properties
protein length:475 AA
molecular weight: 50188,02030 Da
isoelectric point:4,89431
aromaticity:0,08842
hydropathy:0,17032

Domains

Domains [InterPro]
SSF82171
STR
23–342
SSF82171 DC_2202
AFH19806.1
1 475
Architecture
STR
RBD
STR 23-342 | RBD 343-475
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFH19806.1
1 475
Domain Start End Length (AA) Confidence
N-terminal 1 224 224 0,0245
Central domain 225 426 203 0,3803
C-terminal 427 475 48 0,0301
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-224
Central
225-426
C-terminal
427-475

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage 7-7-1
[NCBI] 		1161931 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Agrobacterium sp. H13-3
[NCBI] 		861208 Bacteria > Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Agrobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH19806.1 [NCBI]
Genbank nucleotide accession
JQ312117 [NCBI]
CDS location
range 55312 -> 56739
strand +
CDS
ATGGTAAGGACACTTCAGCGGCGAACTATTGCCGGTGGCTCTATCCCGAACACGTTGCAACTGAAGGTGAAACTGTCGCCTTCAGGTCGCGCTTTGTTCGCCACGGGCAACCCCGGAACAGGGATGTATCGCAAAGTCTGGAATGGCTCCCAATACATCGACGCAAGCGGCGCTGACCACGCCGTGACAAGCTATGTCGTCGCGTGGACGGCAGACGAGACATATCAAGTCGCAATCGGCAGCGGTAGCCCCGGTGTCACGAGCATCTATCTGCGGTCGTTCAATATCGCGACCGGTGCGAATTCGGTTCTTAGCACCGGCAACAACGTTCTCGGAAACGCGACGGCTGTTCTTGGCATTGAACGGATTGTCGGCGATTATTTCATTGCCTATACGCAAAGCCGGATTATCGTTTTCACGATCAATCGAACGACGAACACGCTTGTCGTTCTTTCGAATACCGTCAGCACGATAAACACGATTCGCGGCATTGCCGGTGATGGTCAAAGCAATGTCATCGTTGTTCACAGTGGTCCGACGAACGCGAACAACGGTTTCCAGTCGTACAGCGTCGACCTTTCGACGGGTGTCCTGACGCCGATTGGTTCGCAGCAAGTTCAGGGACTTGGCCGAATCAGCGGTTTCGATTTCCGAAGCGGCAAGGTTCTTTCGTATTCCCGTTACAACCTGAACGAAGTCATGTTCCTTCAGTTGAACGGGTCGAGCGCCCTTGTGCCTGTTCCCGGCTTCAGCGCATTGACGCTTCAGACCAACATGACCGCCGCCGCTGCACAGACGACGACAGCATTCATGCATCTTGCGTTCGAAGAAACGGAAATAACTTACCTTTCTTCGAACGACCCCGGCCAATTCTTCAGCGCTGATATTGCGACGTTGTCGCAGTCTGGATTCGCACCACCTGCGAACCTTCCGACGGGCCGAACAAACGCGATTGATTATGGTGAGATCGGTTCCAGAACGTATGCGTCATATTCCGAAAACGGAAAGATTATGGCGTTCACGTTCCCATTCGCGGCTGCACTTACGGGTGTTTACGTTTTCTCGGAAGTCGACGACCCGGAAATATCTCTTATCCCCGTCGCTCCGATGGCCGAAGCGACGCTTGATCTTGCCATAAACGATTCGGCACAATTTATCCCCGTCGCGCCGATGGCTGACGCCACGGTTGACGCCGCCACGAACGAAAACACGGCGTTCCTTGCTGACGCGCCGATGGCTGACGCCTTCGTGGTATTGACGAAGCTCGTCGCTGTTGATTTTCTGGCACAAGCTCCGATGGCGAGCGCCTTCGTGCAGTTCGACAATACACAGCCATCGGAGCTTGTCGCCGTTGCTCCCATGGCTGACGCGTTCATTCGAGATCGCGGAAACAAGAGGCGCGGCGTAATGGTGGTGCAAACGTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f2adae8298ec75cd988152ce3062799b1d8860580fcf1e22c3cfca71f5cca15
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5943
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome sequence of the flagella-specific Agrobacterium bacteriophage 7-7-1 Schmitt,R., Van den Bossche,A., Lavigne,R. and Kropinski,A.M. 1977-01-01 — GenBank