Protein

View in Explore
Genbank accession
AFR52348.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,95
Protein sequence
MPPVTRLGDIALGHSCYPPSPTIEASSNVFANSIAVHRLGDKIQPHACPDTPPHGRNSSSGSTSVFTNSKATCGIGDAVNCGGIIAQGSNNVFRG
Physico‐chemical
properties
protein length:95 AA
molecular weight: 9688,69960 Da
isoelectric point:7,73865
aromaticity:0,04211
hydropathy:-0,19684

Domains

Domains [InterPro]
cd14737
STR
2–95
cd14737
G3DSA:2.60.200.60
STR
3–94
G3DSA:2.60.200.60
IPR008727
STR
13–86
IPR008727
AFR52348.1
1 95
Architecture
STR
STR 2-95
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFR52348.1
1 95
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,1728
Central domain 58 84 28 0,0045
C-terminal 85 95 10 0,9782
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-84
C-terminal
85-95

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP30A
[NCBI] 		1229752 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus CP30A >
Host Campylobacter jejuni subsp. jejuni
[NCBI] 		32022 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae
Host Campylobacter jejuni subsp. jejuni PT14
[NCBI] 		1201032 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFR52348.1 [NCBI]
Genbank nucleotide accession
JX569801 [NCBI]
CDS location
range 27092 -> 27379
strand -
CDS
ATGCCACCAGTAACTAGATTAGGAGATATAGCATTAGGACATAGTTGTTATCCACCTTCTCCTACAATAGAAGCAAGTTCTAATGTTTTTGCAAATTCAATAGCTGTTCATAGATTAGGTGATAAAATACAACCACACGCATGTCCTGACACACCACCTCATGGTAGAAATAGTTCAAGTGGTAGCACAAGTGTTTTTACAAATTCAAAAGCTACTTGTGGTATAGGGGATGCTGTTAATTGTGGAGGTATAATCGCTCAGGGGAGTAATAATGTTTTTAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab5364da38fcef16f0ccc2c4d953808eb407c397e92e27e7d02da53309fc69f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9503
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host adaption to the bacteriophage carrier state of Campylobacter jejuni Brathwaite,K.J., Siringan,P., Connerton,P.L. and Connerton,I.F. 2015 26004283 GenBank
Recombination and diversity amongst Campylobacter bacteriophage in chickens Connerton,I.F., Siringan,P. and Cummings,N.J. 2007-03-27 — GenBank