Protein

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Genbank accession
QDH50479.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MAQWNKINQDYLNQERSLFEVYMCADRYGNIDNCGGTASGSGAFGEQIVSQIYPIFQLDAIYGLNSDRFELFTNGTGITTSSTLMQVESGTGAYGYGVIRSKRAVRYRPGQGALGRFTAQFSGIATGYTQRAGFFSQEQALQVGYSTEGKFGFLRANGGKAHIHRFLITTPASGTENITVTLAGIATTVSIGAGTSTQNATGIGTHTYNGWIVDRKNGYLDFLSTTVGPLSGTFSIVSDGDLVATGSTSQVGVNQTNEWTYQEDWNHDTLTGVGGSTNPSNMKIDPTKLNVYQINYRWLGVGEIRLAVENQQTGDIMPVHHIHYTNQNNNVHLDNPSLKIGYVAAELDGNTGTGVTVSGASMMGAIEGLVNTTTNPIAAFRSKTGGMNTTNIKYHLLSLKSGLIDNNKINQRELLIKKVSALTTASSTAPCFLYLYLDAPTDNPLDYEPLGNASSYSRSDAQIIGGEPIAVFCVTNGAPETIDLESLRIVLPPQRTLTMAISSDSNLQRAECAVTFIED
Physico‐chemical
properties
protein length:519 AA
molecular weight: 55841,61430 Da
isoelectric point:5,43201
aromaticity:0,08671
hydropathy:-0,21792

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50479.1
1 519
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,0113
Central domain 141 339 200 0,3936
C-terminal 340 519 179 0,9962
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-519

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50479.1 [NCBI]
Genbank nucleotide accession
MN018232 [NCBI]
CDS location
range 12708 -> 14267
strand -
CDS
ATGGCTCAGTGGAATAAGATTAATCAAGATTATCTAAACCAAGAAAGAAGTTTATTTGAAGTATACATGTGTGCCGACAGATACGGCAACATTGATAACTGTGGTGGAACTGCAAGTGGAAGTGGTGCATTTGGAGAACAAATTGTCTCTCAAATTTATCCAATATTTCAACTTGATGCCATATATGGTTTAAACTCAGATAGGTTTGAATTATTTACAAATGGGACTGGTATAACCACTTCTTCAACTCTCATGCAAGTTGAAAGTGGAACTGGTGCTTATGGGTATGGTGTTATTCGTTCTAAAAGAGCAGTAAGATATCGTCCAGGACAAGGTGCTCTTGGAAGATTTACAGCACAGTTTTCTGGTATTGCAACAGGGTATACACAAAGAGCAGGTTTCTTCTCTCAAGAACAAGCACTTCAGGTCGGATACAGCACTGAAGGAAAGTTTGGTTTTTTAAGAGCGAATGGTGGTAAGGCACATATTCACAGATTTCTCATCACAACACCAGCGAGTGGTACAGAAAATATTACAGTAACACTTGCTGGAATTGCAACCACTGTTAGTATTGGTGCAGGAACATCAACTCAAAATGCAACTGGTATTGGAACACACACATATAATGGATGGATAGTTGATCGTAAAAATGGATATCTAGATTTCTTATCTACAACTGTTGGTCCATTATCAGGAACATTTTCAATCGTAAGTGATGGTGATCTTGTAGCAACAGGATCAACCTCTCAGGTAGGAGTAAATCAAACAAATGAATGGACATACCAAGAAGATTGGAATCACGATACTTTAACTGGTGTTGGTGGAAGTACAAATCCATCTAATATGAAAATAGATCCAACAAAGTTAAATGTATATCAAATTAATTATCGTTGGTTGGGTGTTGGTGAAATAAGACTAGCTGTTGAGAATCAACAAACTGGCGATATTATGCCTGTCCATCATATTCATTATACTAACCAAAATAATAATGTCCACTTAGATAATCCATCACTCAAAATTGGTTATGTAGCTGCTGAATTAGATGGCAATACTGGTACTGGTGTAACAGTATCTGGCGCATCTATGATGGGTGCGATTGAAGGTCTTGTGAATACAACAACTAATCCAATCGCTGCCTTTAGATCAAAGACTGGTGGAATGAATACCACTAACATAAAATACCATCTTTTAAGTTTAAAGAGTGGTTTGATTGACAATAATAAAATTAATCAGAGAGAACTCTTAATCAAAAAAGTAAGTGCTCTAACAACAGCATCATCAACAGCACCTTGTTTTCTATACTTATATCTTGATGCTCCAACTGACAATCCTCTTGATTATGAACCTCTTGGAAATGCATCATCATATTCAAGATCTGATGCTCAAATTATTGGTGGAGAACCAATAGCAGTATTTTGTGTCACAAACGGTGCTCCAGAAACAATTGATCTTGAGTCACTAAGAATTGTTTTACCACCACAAAGAACACTTACAATGGCAATTTCTTCTGATTCTAACCTACAAAGGGCAGAATGTGCTGTTACTTTTATTGAGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ac7107ce6ab4b928797573ec1301d11d907d78a490358d24df470b13f1ae321
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7441
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank