Protein

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Genbank accession
XNL96534.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,65
Protein sequence
MANFLKNLHPLLRRDRNKKDNQDPNFALIDALNEEMNQVEKDAIESKLQSSLKTSTSEYLDKFGDWFGVYRKTDENDDVYRARIIKYLLLKRGTNNAIIDAIKDYLGRDDIDVSVYEPFTNIFYTNKSHLNGEDHLMGYYYRFAVINVSIGDYFPVEIIDVINEFKPAGVTLYVTYDGASTIRGGAIIKWLDGLPKIETYQEFDRFTGYDDTFYGHINMNQSKDTDNSTSDIFKTNHSLINSLDVLTGSSSVGRQYINYGYVTSYVYNPGMTSSVSQISASTEGRGQEVPTDYYMYTSTKNNNTVELSMQTTSGVSYLYNNFNFRDYMSKYRPQVDLQSDEARRIVSDYIKELSIDYYLSAVIPPDESIEIKLQVYDFSINRWLTVSINNLSFYEKNIGSNIGYIKDYLNSELNMFTRLEINAGKRDSVDIKVNYLDLMFYYYERGIYTIKPYKALIENYLDISRETYVEAFKIASLSNGDIITKTGFQPIGYLKLVGNYENTRPSTINIVAKDTDNNPIESNELDVYNTVENRNLLQSYKGVNTIAREITSTKEFTVSGWAKEIYSTNYLSKVLKPGKVYTLSFDMEITDNNPTLKSYSDNHGIYLYSNTKGIVVNGVKSMERTIGNKVSVTQTFTAPTITDHRLLIYTGRYTSDGKASTPPVFFNTVKITELKLTEGSSKLEYSPAPEDKPNVIEKGIKFNNILTNIQTLSINSDTILKNVTLYYSYYGDNWVELKTLGNISTGETTETNNLIDLYGLQTVDYSNINPMSKVSLRSIWNVKLGELNNQEGSLSNMPNDYFNAVWQDIDKLSDIELGSMRMVKDTEGGVFDGATGEIIKATLFNVGAYTDLDMLAYTLTNYTEPLTLGSSRLISELKEELLTSESFNVDNRIKVIDSIYEELPNTSIIKNGFVEREVTGSKYLDYGLYEPIEDGTRYKLIVEGEFKDNIEFISLYNSNPNFNETFIYPSEIINGVAEKEFIAKPSTEDKPRLNTDVRIYIRPYDSTISKVRRVELRKV
Physico‐chemical
properties
protein length:1019 AA
molecular weight: 116376,00570 Da
isoelectric point:4,92001
aromaticity:0,11678
hydropathy:-0,44789

Domains

Domains [InterPro]
IPR060691
STR
27–110
IPR060691 DC_1746
Coil
Unmapped
29–49
Coil
XNL96534.1
1 1019
Architecture
STR
STR
STR 27-110 | STR 462-801 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNL96534.1
1 1019
Domain Start End Length (AA) Confidence
N-terminal 1 639 639 0,6281
Central domain 640 928 290 0,2353
C-terminal 929 1019 90 0,1796
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-639
Central
640-928
C-terminal
929-1019

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage sv_nwjns3
[NCBI] 		3390215 Viruses >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNL96534.1 [NCBI]
Genbank nucleotide accession
PQ819473 [NCBI]
CDS location
range 76201 -> 79260
strand +
CDS
GTGGCTAATTTTTTAAAGAATCTTCATCCATTATTAAGAAGAGATAGAAATAAAAAAGATAATCAAGACCCTAACTTTGCTCTGATAGATGCACTCAATGAAGAGATGAATCAAGTAGAGAAAGATGCTATAGAAAGTAAGTTACAATCTTCTCTAAAGACATCTACAAGTGAATATTTAGATAAGTTTGGGGATTGGTTTGGAGTTTATCGTAAGACAGATGAGAACGATGATGTTTATAGAGCAAGAATTATAAAATATTTACTCTTGAAAAGAGGAACTAATAATGCTATAATAGATGCTATAAAAGATTATCTAGGTAGGGATGATATTGATGTAAGTGTATATGAACCTTTTACAAATATTTTCTATACTAACAAATCACATTTAAATGGTGAAGACCACTTAATGGGATACTATTATAGGTTTGCTGTTATTAATGTCTCTATAGGTGATTATTTCCCTGTAGAGATTATAGATGTAATTAATGAATTCAAACCTGCAGGTGTAACTCTGTATGTCACTTATGATGGAGCTTCTACTATTAGAGGCGGAGCAATTATTAAGTGGTTAGATGGGTTACCTAAAATAGAAACATACCAAGAGTTTGATAGGTTTACAGGATACGATGATACATTCTATGGTCATATTAACATGAATCAAAGTAAAGATACTGATAATAGTACATCAGATATTTTTAAAACAAACCATAGCTTAATTAATAGTTTAGATGTTTTAACAGGTTCCTCTAGCGTAGGTAGACAGTATATTAACTATGGATATGTAACATCATATGTTTATAATCCAGGTATGACATCCTCTGTAAGCCAAATAAGTGCTAGTACAGAAGGTAGAGGTCAAGAAGTACCTACTGACTACTATATGTATACTAGTACTAAGAATAACAATACAGTAGAGCTTAGTATGCAAACTACTTCCGGTGTGTCTTATTTATATAATAACTTTAATTTTAGGGACTATATGAGTAAATATAGACCTCAAGTAGATTTACAATCTGATGAGGCTAGAAGAATTGTATCTGATTATATAAAAGAATTAAGTATTGATTACTATCTTAGTGCTGTGATACCTCCTGATGAAAGTATAGAAATTAAACTACAAGTTTATGATTTTTCTATTAATAGATGGCTTACAGTATCAATTAATAATTTATCTTTCTATGAAAAAAATATCGGTAGCAATATAGGATATATAAAAGATTATCTAAACAGTGAATTAAATATGTTTACTAGATTAGAGATAAATGCAGGTAAAAGAGATTCAGTAGATATTAAAGTTAATTACTTAGATTTAATGTTTTATTACTATGAACGAGGTATTTATACAATAAAACCTTATAAAGCATTAATAGAAAATTATTTAGATATATCTAGAGAGACTTATGTAGAAGCATTTAAAATAGCATCATTATCTAATGGAGATATTATAACTAAAACAGGTTTTCAGCCTATAGGGTATTTAAAACTAGTTGGTAATTATGAAAATACAAGACCTAGCACAATAAATATAGTAGCTAAAGATACAGATAATAATCCTATAGAATCTAATGAATTAGATGTATATAATACAGTAGAGAATAGAAATCTATTACAATCTTATAAAGGTGTAAATACGATAGCTAGAGAAATAACTTCTACAAAAGAGTTTACTGTATCAGGATGGGCTAAAGAGATATACTCAACTAATTATCTTTCTAAAGTATTAAAACCAGGTAAAGTTTATACGTTATCTTTTGATATGGAAATAACAGATAATAACCCAACTCTTAAATCTTATTCTGATAACCATGGTATATATTTATACAGTAATACTAAGGGAATTGTTGTTAATGGTGTTAAATCTATGGAACGTACTATAGGTAACAAAGTATCCGTAACTCAAACTTTTACAGCTCCTACTATTACTGACCATAGACTACTAATATATACTGGAAGATATACATCTGATGGTAAAGCATCAACTCCTCCAGTGTTCTTTAATACAGTTAAAATTACGGAATTAAAATTGACTGAGGGTTCCTCTAAGTTAGAGTACTCACCTGCTCCGGAAGATAAACCTAACGTAATAGAAAAAGGAATTAAATTTAATAATATCCTAACTAATATACAGACTTTAAGTATTAATTCGGATACTATCTTAAAAAATGTAACTTTATATTATTCTTACTATGGTGATAATTGGGTAGAACTAAAGACTCTAGGAAATATTAGTACTGGAGAAACAACAGAAACCAATAACTTAATAGATTTATATGGATTACAGACAGTAGATTATTCTAATATAAATCCAATGTCTAAAGTATCATTACGTTCCATTTGGAATGTTAAGCTAGGTGAATTGAACAATCAAGAAGGTTCTTTATCTAATATGCCTAATGATTACTTTAATGCTGTATGGCAGGATATAGATAAATTATCAGATATTGAGCTAGGTTCTATGAGAATGGTTAAAGACACTGAGGGCGGAGTATTCGATGGAGCTACAGGTGAAATTATTAAGGCTACTCTATTTAATGTCGGTGCTTATACTGATTTAGATATGTTAGCTTATACTTTGACTAATTATACTGAACCGTTAACGTTAGGCTCTAGTCGATTAATAAGTGAGCTAAAAGAAGAACTACTAACATCAGAATCATTTAATGTCGATAATAGAATTAAAGTAATTGACTCAATATATGAGGAGTTACCAAATACAAGCATTATTAAAAATGGATTTGTTGAAAGAGAAGTTACAGGTTCTAAATATTTAGATTACGGTTTATATGAGCCTATAGAAGATGGTACTAGATATAAACTTATTGTCGAAGGAGAATTTAAAGATAATATAGAATTTATATCTTTATACAATTCTAACCCTAACTTTAATGAAACATTTATATATCCATCAGAGATAATTAATGGAGTTGCTGAAAAAGAATTTATTGCAAAACCATCTACTGAAGACAAACCAAGGTTAAATACAGATGTTAGAATATATATACGACCTTATGATTCAACTATCTCTAAAGTAAGAAGAGTAGAATTAAGGAAAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ad7ace15a96d70ed628b0d4a81265d79a440c89418ea73c7c652b68e10078d5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50