Protein

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Genbank accession
YP_007501017.2 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MEVQGSLGRQIQGISQQPPAVRLDGQCSEMVNMVPDVVEGTKSRMGTTHIAKLLEYGEDDMAVHHYRRGGEGEEEYFFIMKKGQVPEIFDKQGRKCMVQSQDAPMIYLSEVTNPREDVQFMTIADVTFMLNRKKVVKARPERSPKVGNTAIVFMAYGQYGTHYKIIIDGVVAAGYKTADGAEAHHIETIRTESIAYNLHQSLQSWDKIGDYETQLDGTSIYITRKDGSTDFDITTEDGAKGKDLVAIKYKVASTDLLPSRAPEGYKVQVWPTGSKPESRYWLQAEKQNGNIVSWKETLAADVLIGFDKSTMPYIIERTGFVNGVAQFKIRQGDWEDRKVGDDLTNPMPSFIDEEVPQTLGGMFMVQNRLCVTAGEAVIATRTSYFFDFFRYTAVSAVATDPFDVFSDASEVYQLKHAVTLDGSTVLFADKSQFILPGDKPLEKSNVLLKPVTTFEVNNNVKPVATGESVMFATSEGAYSGIREFYTDSYSDTKKAQAITSHANKLLEGNVIMMSASTNVNRLLVLTDKYRNIIYCYDWLWQGTERVQAAWHKWEWPLGTFIRGMFYSGEHLYLLIERGSTGVYLERMDMGDALVYNLNDRIRMDRQAELIFRHVKAEDVWVSEPLPWQPTDVALLDCVLIDGWDSYIGGSFLFSYNSRDNTLTTTFDMHDDNHVKAKVVVGQLYPQEFEPTQVVIRDNQERVSYIDVPTVGLVHLNLDKYPDFKVEVKNLKSGKVRNVLASNRIGGARNNIVGYVEPREGVFKFPLRSLSTDTVYRVMVESPHTFQLRDIEWEGSYNPTKRRV
Physico‐chemical
properties
protein length:803 AA
molecular weight: 90915,91240 Da
isoelectric point:5,50442
aromaticity:0,10461
hydropathy:-0,36065

Domains

Domains [InterPro]
IPR058003
TTP
3–802
IPR058003
YP_007501017.2
1 803
Architecture
TTP
TTP 3-802 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007501017.2
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9861
Central domain 144 359 217 0,1095
C-terminal 360 803 443 0,3033
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-359
C-terminal
360-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage UAB_Phi78
[NCBI] 		979726 Uroviricota > Caudoviricetes > Autographivirales > Molineuxvirinae > Zindervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007501017.2 [NCBI]
Genbank nucleotide accession
NC_020414 [NCBI]
CDS location
range 25374 -> 27785
strand +
CDS
ATGGAAGTTCAAGGTTCTTTAGGTCGCCAGATTCAAGGCATAAGCCAGCAACCTCCAGCAGTGAGGCTAGATGGACAGTGTTCAGAAATGGTTAACATGGTGCCTGATGTAGTGGAGGGAACTAAGTCCCGCATGGGTACAACTCATATTGCCAAGCTCTTAGAGTATGGCGAAGATGACATGGCAGTGCATCATTACCGTAGAGGTGGTGAAGGTGAAGAGGAATACTTCTTCATAATGAAGAAGGGGCAAGTACCTGAAATCTTTGACAAACAAGGCCGTAAGTGCATGGTTCAATCCCAAGACGCACCCATGATCTACCTTAGTGAGGTGACTAACCCTAGAGAGGACGTGCAGTTTATGACAATTGCAGATGTCACTTTTATGCTTAATCGCAAGAAGGTGGTTAAAGCAAGACCAGAACGTTCCCCTAAAGTAGGAAATACTGCCATTGTCTTCATGGCCTATGGTCAATATGGTACTCATTACAAAATCATTATTGACGGTGTGGTGGCCGCAGGCTACAAGACCGCTGATGGTGCCGAAGCTCACCATATTGAGACTATTAGGACGGAGAGTATAGCGTACAACCTACATCAGTCACTTCAAAGCTGGGATAAAATTGGGGATTATGAGACGCAATTGGATGGTACATCAATCTACATTACAAGGAAAGACGGCTCTACTGACTTCGATATTACCACGGAAGATGGTGCCAAAGGTAAAGATTTGGTAGCAATCAAATATAAGGTGGCATCAACCGACCTGCTGCCTTCACGTGCGCCAGAAGGGTACAAGGTACAAGTCTGGCCTACTGGCAGTAAACCGGAATCTAGGTATTGGTTGCAAGCGGAAAAGCAGAATGGGAACATTGTCTCTTGGAAGGAGACACTAGCCGCCGATGTGTTGATAGGGTTTGATAAATCAACTATGCCTTACATCATAGAGCGTACAGGGTTTGTCAACGGAGTCGCACAGTTTAAGATACGGCAAGGAGACTGGGAAGACCGTAAGGTAGGTGATGACCTGACTAACCCTATGCCTTCCTTCATTGATGAGGAAGTACCTCAGACATTAGGTGGTATGTTCATGGTGCAGAATCGTCTATGTGTTACTGCTGGCGAGGCTGTAATTGCAACTCGCACATCCTACTTCTTTGACTTCTTCCGGTACACTGCTGTATCTGCTGTAGCAACTGACCCTTTTGATGTATTCTCAGATGCTAGTGAGGTTTATCAGCTCAAACATGCAGTTACCTTGGATGGGTCTACTGTCTTGTTTGCAGATAAATCTCAGTTCATCCTTCCTGGTGATAAGCCTCTTGAGAAGTCAAACGTATTGCTCAAACCTGTAACCACATTTGAAGTTAACAATAATGTCAAACCTGTAGCCACAGGTGAGTCTGTAATGTTTGCTACAAGTGAAGGTGCTTATTCAGGCATAAGGGAGTTCTACACAGACTCTTATAGTGATACCAAAAAGGCGCAAGCAATAACTAGTCATGCCAATAAGCTGCTGGAAGGTAATGTTATCATGATGTCAGCCAGTACTAATGTGAACAGATTGCTTGTCTTGACCGACAAGTACCGAAACATTATCTACTGCTATGACTGGTTGTGGCAAGGAACCGAACGGGTACAAGCTGCATGGCATAAATGGGAGTGGCCATTAGGTACATTCATTCGTGGTATGTTCTATTCAGGGGAACACTTGTATCTGCTCATCGAACGTGGTAGTACAGGTGTGTACCTTGAACGTATGGATATGGGTGATGCGCTTGTATATAACCTGAATGACCGCATACGTATGGACAGGCAGGCTGAACTTATCTTTAGACATGTCAAAGCGGAAGATGTCTGGGTATCTGAGCCGTTGCCTTGGCAACCAACCGATGTGGCCTTGCTTGATTGCGTGCTGATAGACGGCTGGGATTCTTACATAGGCGGGTCTTTCTTGTTTAGCTATAATTCAAGAGATAACACCTTAACTACAACCTTTGATATGCACGATGATAACCACGTGAAAGCTAAGGTAGTAGTAGGTCAGTTATATCCTCAAGAGTTTGAACCCACACAGGTAGTCATACGTGATAACCAAGAGAGGGTGTCTTACATAGATGTACCAACAGTTGGCTTGGTTCACCTTAATCTAGACAAGTACCCTGACTTCAAGGTTGAGGTCAAGAATTTGAAGAGTGGCAAAGTGCGAAATGTATTGGCCTCTAATAGAATAGGTGGTGCCAGAAATAATATTGTTGGTTATGTAGAGCCGAGAGAAGGTGTATTCAAATTCCCACTAAGGTCTCTTAGCACCGACACAGTTTATCGTGTGATGGTAGAATCACCTCACACCTTCCAGCTTAGAGATATCGAGTGGGAAGGTTCGTACAACCCTACTAAGAGGAGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e925472a67a30c2cf381c4c8967fda458e7552e1afa3edea85a57c299c4b603b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9061
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
New enterobacteriophages and their use to control Salmonella enterica Spricigo,D.A., Bardina,C., Cortes,M.P. and Llagostera,M. 2013-07 — GenBank