Protein

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Genbank accession
YP_195254.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MSFYQGIKSAKAAAIGTIMPWTGNISSIPDGWIICDGSSIPARDYPLLARAMQDTYNASTTSTFIGTFPDYSGNIVLPALLNRPVCDIETSYFGPSSPTGNPIDQDSTATAQITPFIGPNTDNGINTTFNDVATDVIFSLNERVTTPGGLPYYTGKLSGNTIIEGSGEGVKVMFFGPRKLGRGHIKSHRHGGRNIPTILVNPSTEPGEGVIPWSNVRYNFRLDVSDNRPGPTGDTFNLRYELFDEERGRSGWGAGTPGRTVGGVVAENPPVNWTPQSCVWNPIKDEITEPSNVRTFNSGVGGSATFNALSGGITGFNRGDANARTVKYGLSGAELPVPSGYTDFYPDVLDNFPASSLDIYGTLNSNPGWDFLLTTQSAGRTDVIRPHTHDEFDVTFDRAGLRPNTSIEVDVYAPASNLNLDNTRNLGVLQINFNTSQPGVTSLYLIRAY
Physico‐chemical
properties
protein length:449 AA
molecular weight: 48342,01980 Da
isoelectric point:4,97497
aromaticity:0,09800
hydropathy:-0,32539

Domains

Domains [InterPro]
IPR037053
ATT
7–71
IPR037053 DC_0344
SSF88874
STR
10–76
SSF88874
SSF88874
STR
10–85
SSF88874
IPR011083
ATT
16–75
IPR011083
YP_195254.1
1 449
Architecture
ATT
STR
ATT 7-75 | STR 76-449
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_195254.1
1 449
Domain Start End Length (AA) Confidence
N-terminal 1 213 213 0,2348
Central domain 214 412 200 0,4282
C-terminal 413 449 36 0,3482
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-213
Central
214-412
C-terminal
413-449

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-PM2
[NCBI] 		238854 Uroviricota > Caudoviricetes > Pantevenvirales > Nodensvirus > Nodensvirus spm2
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_195254.1 [NCBI]
Genbank nucleotide accession
NC_006820.1 [NCBI]
CDS location
range 177271 -> 178620
strand +
CDS
ATGTCTTTTTACCAGGGAATTAAATCTGCAAAAGCAGCTGCCATCGGCACAATTATGCCATGGACAGGAAATATCTCTAGTATACCAGACGGATGGATTATTTGCGATGGAAGTAGTATTCCTGCTCGTGATTATCCTTTGCTAGCAAGAGCTATGCAAGATACTTACAATGCATCTACTACTTCCACTTTTATCGGTACTTTTCCTGATTATAGTGGAAACATTGTTTTACCAGCACTACTTAATAGACCAGTTTGTGATATTGAGACTAGTTATTTTGGTCCCTCTTCTCCTACGGGGAATCCTATCGATCAAGATTCCACCGCAACTGCACAAATTACACCATTTATTGGACCAAATACAGATAATGGTATTAATACAACCTTTAATGATGTTGCAACTGATGTTATTTTTTCTTTGAATGAAAGAGTCACAACTCCTGGGGGACTACCATACTACACTGGAAAATTGAGTGGTAATACAATTATCGAAGGTTCTGGTGAAGGAGTAAAGGTAATGTTTTTCGGACCAAGAAAATTGGGTCGTGGACATATCAAATCACATAGACATGGTGGAAGAAATATTCCAACAATTCTTGTAAATCCATCTACAGAACCAGGAGAAGGTGTTATTCCTTGGAGTAATGTTAGGTATAATTTTAGATTGGATGTTAGTGATAACAGACCAGGACCAACTGGTGATACATTTAATCTAAGATATGAATTGTTTGATGAAGAAAGAGGAAGATCTGGATGGGGAGCAGGAACACCAGGAAGAACAGTAGGCGGAGTTGTTGCCGAAAATCCACCAGTTAACTGGACTCCCCAAAGTTGTGTTTGGAATCCTATTAAAGATGAGATTACCGAACCAAGTAATGTTAGAACTTTTAATAGTGGCGTTGGCGGCAGTGCAACATTTAATGCATTGTCTGGTGGTATAACAGGATTTAATCGTGGTGATGCAAATGCTAGAACAGTAAAGTATGGACTTAGTGGTGCAGAACTTCCTGTTCCTAGTGGATATACTGATTTTTATCCCGACGTTCTTGATAATTTTCCAGCATCTTCTCTTGATATATATGGCACACTTAATAGTAATCCAGGGTGGGATTTCTTATTAACTACTCAAAGTGCTGGCAGAACAGATGTAATCAGACCTCACACACATGATGAATTTGATGTAACTTTTGATAGAGCTGGTTTAAGACCGAATACTTCAATTGAAGTGGATGTTTATGCTCCAGCATCTAATCTCAATCTAGATAATACTAGAAATCTTGGTGTGCTTCAGATTAATTTCAATACATCACAACCAGGCGTAACTTCACTCTACCTCATTAGAGCTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e74c0d7f34617364aeec963f8231e0af060670c7381317f77f59a74f53eefc21
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3632
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50