Protein

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Genbank accession
YP_009290173.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSNKVNMMLDVTKAGIQNPLVKLRQGDGNWEALRVTVTANGEPLELQGWAISFMGTTAGQHRIADTNVNIVEAQSGIFEYTPSKAWGMDVGEFKNAYFKFVKGDGSASTASFRVLVDKAVDITDEEAENYIAVFDVMIETATADLNNKFSSLRTNTDKAMADATTANANASAAVKAANDAVNTMNNSVKTVQVGGRNLLLGTANWSGDSTRWEKRGTVTDNPGTYRGMTIAATYGAWRSPIYKLQNAGILQVGKTYTFSTYVRNTSDTDTRVAYYYDNEIATQHAYSVALPAHTDWTRVFVTFKVLKDPTTSANGLRWEGQNELTNGQIQFAGYKLEEGNVPTDWTPAPEDAPSNDAQLVHKTGNETVAGDKTFTGKLSVNNLNVSGDTPNTVLTYNSGFSGGSSYYFVRDKTVHVFLINVLGFTAGSQRPFELPNSLRTSVPGSTYFVGMYGTSTTLVGFNGTQVYISTSSVPYNANTPLNAHLTWLLP
Physico‐chemical
properties
protein length:490 AA
molecular weight: 53217,52330 Da
isoelectric point:5,62396
aromaticity:0,10204
hydropathy:-0,32286

Domains

Domains [InterPro]
DC_1249
STR
1–290
DC_1249 G3DSA:6.10.140.2190
G3DSA:2.60.40.3350
ATT
3–122
G3DSA:2.60.40.3350 G3DSA:2.60.120.260 G3DSA:6.10.140.2190
IPR018913
ATT
4–142
IPR018913 IPR003305 SSF69349
IPR040956
Unmapped
356–378
IPR040956
YP_009290173.1
1 490
Architecture
ATT
STR
STR
ATT 1-142 | STR 143-338 | STR 348-383 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Weissella phage WCP30
[NCBI] 		1837862 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Weissella sp.
[NCBI] 		1896315 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009290173.1 [NCBI]
Genbank nucleotide accession
NC_031101 [NCBI]
CDS location
range 4736 -> 6208
strand -
CDS
ATGAGCAACAAAGTAAACATGATGCTTGATGTAACTAAGGCGGGAATTCAAAACCCATTGGTTAAGTTACGTCAAGGTGATGGGAATTGGGAAGCACTGCGAGTAACGGTAACGGCTAACGGTGAACCACTAGAACTGCAAGGCTGGGCAATCAGTTTTATGGGAACAACAGCGGGACAACATCGAATTGCGGATACTAATGTTAATATTGTTGAAGCACAAAGTGGTATTTTTGAATACACGCCAAGTAAGGCTTGGGGAATGGACGTCGGTGAATTTAAGAACGCTTACTTCAAGTTTGTGAAGGGCGATGGATCAGCGTCAACTGCCAGTTTCCGTGTTTTGGTAGACAAGGCGGTCGATATTACAGACGAAGAAGCAGAAAATTATATTGCTGTATTTGACGTAATGATTGAAACTGCGACAGCAGACTTGAACAACAAGTTCAGTAGCTTGCGCACAAACACAGACAAAGCGATGGCTGACGCAACTACTGCTAACGCAAATGCAAGTGCTGCAGTTAAAGCCGCTAATGATGCCGTTAATACGATGAATAATTCAGTTAAGACGGTACAGGTTGGTGGACGTAACCTATTGTTAGGAACTGCCAACTGGTCTGGTGATAGCACTAGGTGGGAAAAGCGTGGCACTGTAACCGACAATCCTGGAACATACAGAGGAATGACCATTGCTGCCACATATGGTGCGTGGAGAAGTCCAATTTATAAGTTGCAAAACGCGGGAATATTACAAGTTGGAAAGACATATACATTCTCTACTTATGTCAGGAATACATCTGATACAGATACAAGAGTAGCATATTACTATGATAACGAAATTGCGACACAACATGCTTATTCAGTAGCACTACCAGCTCATACGGATTGGACTAGAGTATTCGTAACATTCAAGGTATTAAAGGACCCAACAACTAGTGCTAATGGTTTGCGTTGGGAGGGACAAAACGAACTCACGAATGGACAAATTCAATTCGCTGGTTATAAGCTAGAAGAAGGGAACGTACCAACTGATTGGACACCCGCTCCAGAAGATGCGCCAAGCAACGACGCACAACTAGTACACAAGACTGGCAATGAAACTGTTGCTGGTGATAAGACGTTCACAGGGAAATTGTCTGTAAACAATTTAAATGTTAGTGGAGACACGCCCAATACGGTGCTAACATATAATTCTGGTTTTTCTGGTGGTTCCAGCTACTATTTTGTTCGTGACAAAACAGTTCATGTATTTTTGATAAATGTACTAGGGTTTACTGCCGGAAGCCAACGACCATTTGAGCTTCCAAATAGCTTAAGAACTTCTGTTCCGGGATCAACATATTTTGTTGGTATGTATGGAACTAGTACCACACTTGTTGGTTTCAATGGCACACAAGTTTATATCTCAACTAGTTCAGTTCCTTATAATGCTAACACACCTTTAAATGCACATCTAACTTGGCTGTTGCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fb19b265ab054e787116e30a0ba10d5a2a6bf0af3c494a35ef38b30e544ec649
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of WCP30 phage for Weissella Lee,Y.-D. and Park,J.-H. 2011-09-27 — GenBank