Protein

View in Explore
Genbank accession
YP_009324809.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQEEVCTVIEAAGIQLSKGEHTQLHAAIGRLIDEQVKTRLEKNQNGADIPNKPLFLQNVGLEETINLAADALQKSQNGGDIPDKKQFARTIGAVTSTTITLGESGWFKIATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRAGNGSPVGITATLWRRSPAAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGNSTSGQTYTLFNSLMKPTAGDVEALSVNGGRLNGSLGIGTDNALGGNSIVLGDNDTGFKQDGDGVLGIYANNARVGYIDNSGLHMSVDVLTNGGIRAGDGKRLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDYQGENIDGIAYAPLQKRVGNQWYTVQGGTA
Physico‐chemical
properties
protein length:520 AA
molecular weight: 55388,41560 Da
isoelectric point:4,83281
aromaticity:0,08269
hydropathy:-0,33962

Domains

Domains [InterPro]
DC_2005
STR
100–398
DC_2005 G3DSA:6.20.70.20
IPR051934
Unmapped
296–519
IPR051934
DC_0801
RBD
449–517
DC_0801
YP_009324809.1
1 520
Architecture
STR
RBD
STR 100-398 | RBD 424-517 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 118970_sal3
[NCBI] 		1813771 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009324809.1 [NCBI]
Genbank nucleotide accession
NC_031940.1 [NCBI]
CDS location
range 54828 -> 56390
strand +
CDS
ATGCACAGAATTGATACGCCCACCGCGCAAAAAGATAAATTTGGTCAGGGAAAAAACGGATTTACGAATGGTGATCCCGCCACGGGCCGCCGCGCAACGGATCTCAACAGTGATATGTGGGATGCAGTCCAGGAAGAGGTCTGCACTGTTATTGAAGCCGCCGGCATACAACTCAGTAAAGGCGAACATACGCAGCTTCACGCCGCCATTGGCAGGCTGATCGATGAACAGGTTAAAACCCGTCTTGAAAAAAATCAGAATGGCGCGGACATCCCGAATAAGCCGCTGTTTCTCCAGAACGTTGGTTTAGAAGAAACGATAAATCTGGCCGCCGATGCACTACAAAAATCACAGAATGGCGGCGATATTCCGGACAAAAAACAATTTGCGAGAACTATCGGCGCGGTAACGTCGACCACCATTACACTTGGCGAATCAGGCTGGTTCAAAATCGCCACGGTTGTAATGCCGCAGGCTACATCAACTGCGGTGATTAAACTGTACGGTGGGGCGGGGTTTAACGCTGGTTCACCTGAACAGGCGGCAATCAGCGAACTGGTATTGCGTGCCGGTAATGGTTCACCTGTTGGAATAACTGCCACGTTGTGGAGACGCTCGCCTGCTGCTGCTAACGAGGTCGCATGGGTTAATACATCAGGCGACACCTACGATATTTATATTAATATCGGCCAGTATGCGTACTGGTTAATTGCGCAATATGATTACACCGGTAATGCAAATGTCACGCTGCACAGTACGCCTGAATATTCATCAGTTCAGCCGGGAAACTCAACCAGCGGTCAGACATATACACTGTTTAATAGTCTGATGAAACCCACAGCCGGTGACGTTGAGGCACTGTCAGTTAATGGAGGGCGACTGAATGGGTCTTTAGGCATTGGTACTGACAATGCGCTGGGCGGTAATTCAATTGTGCTCGGTGATAACGATACCGGGTTTAAACAGGATGGCGACGGCGTTCTGGGTATTTACGCCAATAATGCCCGGGTCGGTTATATCGATAATTCCGGGTTACACATGTCAGTAGATGTTCTCACTAATGGTGGCATACGAGCAGGTGACGGAAAAAGGCTTTCACTGACGAGCAATAATAATTCGACAATGACAGCCACGTTTAATTTATGGGGCGATGCAAACAGGCCAACAGTTATTGAACTGGACGACGATCAGGGATGGCATCTGTACAGCCAGCGAAATCCTGATGGTTCGATTGTCTTTACGGTCAATGGCGATATCACCGCTAACACGCTTCGTGCAGGCGGGGCCATCTATCAGAATAACGGCGACATCTTTGGTTCTGTCTGGGGGAATAGCTGGCTGAGTCTGTGGATTAATAATAATTTCGTCGCAGATGTTCAGTTAGGGGCTGGCACATCAGTGACTACCTGGAACAATGCAGGTTCCTGGCCTAACACTCCCGGATATGTAGTTACCTCCGTCTGGAAAGATTATCAGGGCGAAAATATTGATGGTATTGCTTATGCGCCTTTGCAAAAACGAGTCGGGAATCAGTGGTATACCGTACAAGGGGGAACGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ddc2c0471e545120bcddab855670f9bbc550f43b1d662095e2eee5bf0956fce
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7594
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of a Myoviridae Bacteriophages infecting Salmonella enterica subsp. Enteridis Paradiso,R., Orsini,M., Borriello,G. and Galiero,G. 2016-12-29 — GenBank