Protein

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Genbank accession
XBM94927.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAVRYYSSTAAETTLSGTINSSATNITVGSTTGFPVSFPYTLALDYEGASEELVDVTAAAGTNLTIVRAADGTSATSHSAGARVRHVSSARDFRDSRTHEENVAGVHGLSGNVVGTTDTQTLSNKTLINATGTLNRIDILSEGGTAWQTTINGDIDFNTNLTQWKRGPSEPHEVATLRNNGALYVRNQDAAADSVYNTYRFRATKDDGSTDIFYVLSGGEVKALQDAGQNGMTVQPRADNSTSRAFGVRNAANSATLFAVMQDGRVDINGTNPAFSQFDITAPAGQSADMMRVMDNGGNTRFAVQSTGRALANRGMTVAQPGLTSGAVLQVGGTNAGYTGNLQQWVSPSNTIVANIDQNGRAEFGQETATGTSVVTAAAGFSVNSATIGVKKAGWIFIRIILERTGGSLIANSKGNITDTAACTVAAAWRPDSVLGSTDTVFPMGASVTSGMVRLLPSTGLVELTDLHSGSEIRNGDIVRITLQYPA
Physico‐chemical
properties
protein length:487 AA
molecular weight: 50847,54250 Da
isoelectric point:5,45191
aromaticity:0,06160
hydropathy:-0,17947

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XBM94927.1
1 487
Domain Start End Length (AA) Confidence
N-terminal 1 15 15 0,9279
Central domain 16 214 200 0,1194
C-terminal 215 487 272 0,9267
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-15
Central
16-214
C-terminal
215-487

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage Abafar
[NCBI] 		3158855 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptomyces albidoflavus
[NCBI] 		1886 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XBM94927.1 [NCBI]
Genbank nucleotide accession
PP750865 [NCBI]
CDS location
range 22470 -> 23933
strand +
CDS
ATGGCCGTCCGTTACTACAGCAGCACTGCGGCAGAGACCACTCTCAGCGGCACCATCAACTCTTCCGCCACCAACATCACTGTGGGAAGCACTACCGGATTCCCGGTCAGCTTCCCCTACACGCTGGCGCTGGACTATGAGGGTGCATCTGAGGAGCTGGTAGATGTCACTGCGGCTGCCGGAACGAACCTCACGATCGTCCGAGCGGCGGACGGTACAAGCGCCACCAGCCACTCGGCTGGTGCGCGCGTTCGTCATGTCTCTTCTGCCCGAGACTTCCGTGACTCCCGCACTCACGAAGAGAATGTGGCAGGAGTGCACGGGCTGAGCGGCAATGTCGTGGGTACGACTGATACCCAGACCCTGTCAAACAAGACCCTGATCAATGCCACTGGAACTCTGAACAGGATTGACATCCTGTCCGAGGGAGGTACTGCCTGGCAGACCACGATCAATGGTGACATCGACTTCAACACCAACCTGACGCAGTGGAAGCGTGGACCTTCCGAGCCTCACGAGGTGGCAACGCTCCGCAACAACGGGGCGCTGTACGTCCGCAACCAGGATGCTGCGGCAGACAGCGTGTACAACACCTACAGGTTCCGTGCAACCAAGGATGACGGCAGCACCGACATCTTCTACGTCCTCTCCGGTGGAGAGGTGAAGGCGCTCCAGGATGCGGGGCAGAACGGCATGACCGTTCAGCCTCGTGCCGACAACAGCACCTCACGAGCGTTCGGTGTCCGCAATGCAGCCAACAGTGCAACTCTGTTCGCCGTCATGCAGGATGGTCGCGTTGACATCAACGGCACCAACCCGGCATTCAGCCAGTTCGACATCACCGCTCCAGCGGGTCAGTCTGCCGACATGATGCGAGTCATGGACAACGGAGGCAACACCAGGTTCGCCGTCCAGTCCACTGGCCGAGCGCTGGCCAACCGTGGCATGACTGTGGCGCAGCCCGGACTCACGTCCGGTGCTGTCCTCCAGGTCGGAGGAACGAACGCTGGCTACACTGGCAACCTTCAGCAGTGGGTCAGCCCAAGCAACACCATCGTTGCGAACATCGATCAGAACGGTCGAGCAGAGTTCGGGCAGGAGACTGCGACCGGGACGTCTGTCGTTACCGCAGCGGCAGGCTTCAGCGTCAACAGTGCAACGATCGGAGTCAAGAAGGCGGGATGGATCTTCATCCGAATCATCCTTGAGAGGACTGGCGGGTCCCTGATCGCCAACTCCAAGGGAAACATCACCGACACGGCAGCCTGCACTGTGGCCGCCGCCTGGCGGCCAGACAGCGTGCTTGGGTCTACTGACACCGTGTTTCCGATGGGAGCATCCGTCACTAGCGGTATGGTTCGCCTGCTTCCGTCTACCGGACTCGTCGAGCTGACCGACCTTCACAGTGGCAGCGAGATCCGCAACGGCGACATCGTTCGCATCACCCTTCAGTACCCGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b2cc208e88b6b28b0122f7d27327c102fa900070f43489dec6719f9e6379244
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7765
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of the new Streptomyces phages Kamino, Geonosis, Abafar and Scarif infecting a broad range of host species Rackow,B., Rolland,C., Mohnen,I., Wittmann,J., Muesken,M., Overmann,J. and Frunzke,J. — — GenBank