Protein

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Genbank accession
YAF80676.1 [GenBank]
Protein name
collar tail protein for L-shaped tail fiber attachment
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MSTENRVIDLVIDEKVPYGLMMQFLDVDDSTYPPTSTPVNLTGYSLRGTIKNSLDENAEILASFTTNIIDAAQGAVAISLPVESVENIGAKASKDRDKYNPRQRFAGYYDIIMTRDVIGSAISSFRIMEGKVFISDGVTK
Physico‐chemical
properties
protein length:140 AA
molecular weight: 15377,24610 Da
isoelectric point:4,67236
aromaticity:0,07857
hydropathy:-0,12571

Domains

Domains [InterPro]
IPR055688
STR
4–134
IPR055688
YAF80676.1
1 140
Architecture
STR
STR 4-134 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-01
[NCBI] 		3459905 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF80676.1 [NCBI]
Genbank nucleotide accession
PX104387.1 [NCBI]
CDS location
range 19992 -> 20414
strand +
CDS
ATGAGTACTGAAAATAGAGTTATAGACTTAGTAATAGATGAGAAAGTACCATATGGTTTAATGATGCAGTTCTTAGATGTTGATGATAGTACTTATCCACCTACAAGTACCCCTGTTAACTTAACTGGGTATTCTCTAAGGGGTACTATAAAAAATAGCCTAGATGAGAATGCGGAGATATTGGCATCCTTTACTACTAATATTATTGATGCTGCTCAAGGGGCTGTAGCTATAAGTTTACCAGTAGAATCTGTGGAGAATATAGGAGCTAAAGCATCTAAAGATAGAGATAAATATAATCCTCGTCAGCGATTCGCAGGATACTATGATATAATTATGACTAGAGATGTTATAGGATCTGCAATTAGCTCCTTTCGTATAATGGAGGGTAAAGTATTTATCAGTGATGGGGTAACTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
edeb33a768cbe054f9efc1d73ea6b497db52f45cafdfa1e34e5e45ca9eac2353
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8545
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank