Protein

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Genbank accession
YP_004324405.1 [GenBank]
Protein name
tail collar protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MAVNNNYSKVRSHYGGYIGSIQVHSTPYLANINDPNGANFQEHVPAGYLKCDGSIKNAQEFVALSQILGVGQNSKFRKTNVDLREADQDTGDLGQFQLPDLGSKVIIPSRSVGDYLNTFVGDTEETRVGPAVEVLCNEGTQLTCDFIGNFRGIPVETSYDFRSSPKYQFETTSQSAFLDIENFQGHAHNANTNYLNYTTNHAVGGDGKDGGNASGNSGAGNALEQSEANTTALSSHTHRITKPTQYIHNFQYQHQPFDIPADNVNTTLNVSVENINKLDAVVTPFIIVTYIIKI
Physico‐chemical
properties
protein length:294 AA
molecular weight: 32101,87220 Da
isoelectric point:5,27491
aromaticity:0,09184
hydropathy:-0,45986

Domains

Domains [InterPro]
DC_1651
STR
2–294
DC_1651
YP_004324405.1
1 294
Architecture
STR
STR 2-294
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn1
[NCBI] 		444861 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus syn1
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324405.1 [NCBI]
Genbank nucleotide accession
NC_015288 [NCBI]
CDS location
range 34948 -> 35832
strand +
CDS
ATGGCAGTCAACAATAACTATTCTAAAGTCAGGTCACACTATGGTGGTTACATTGGATCTATTCAGGTTCATTCAACTCCATACCTTGCAAATATAAATGATCCCAACGGAGCAAATTTTCAGGAGCATGTTCCTGCTGGTTATTTGAAGTGTGATGGATCTATTAAAAATGCACAGGAGTTTGTTGCACTATCACAAATCCTAGGTGTGGGTCAAAACTCTAAGTTTAGAAAAACAAATGTAGATCTTAGAGAAGCAGATCAAGACACAGGAGACCTAGGACAGTTTCAGTTACCTGATCTTGGATCTAAAGTTATTATTCCATCTAGATCAGTTGGTGACTACTTGAATACTTTTGTTGGTGATACTGAAGAGACTAGAGTTGGACCTGCCGTTGAGGTTTTATGTAACGAAGGAACACAGTTGACATGTGATTTTATTGGTAACTTTCGTGGAATACCAGTAGAGACATCATATGATTTTAGATCTAGTCCTAAGTATCAGTTTGAGACTACATCACAGTCGGCATTCCTAGATATTGAGAACTTCCAAGGTCATGCTCACAATGCAAACACAAACTATCTAAACTACACTACAAACCATGCTGTTGGTGGTGATGGTAAAGATGGTGGTAATGCTAGTGGTAACTCTGGAGCAGGAAATGCTTTAGAACAGAGTGAAGCTAATACTACAGCACTATCATCACACACTCATAGAATTACAAAACCAACACAATATATTCATAACTTTCAATATCAGCATCAACCATTTGATATTCCTGCAGATAATGTCAATACTACATTGAATGTATCTGTCGAAAATATCAATAAACTTGATGCTGTAGTTACTCCTTTTATTATTGTCACATACATCATCAAGATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a819dec9852595ae4ba7169250f9355d8897a0408ad857648c5bd83e09557be9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank