Protein

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Genbank accession
WYD65252.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALISQSVKNLKGGISQQPNILRFPEQGSEQINGWSSETEGLQKRPPFVFTKTIGDQNALGAKPLVHLINRDSVEQYYVVFTGQGVRVFDLNGKEYAVKGDLSYVKVGNPRDDLRMVTVADYTFIVNRNMVVRADTAPIYTLKENGDCLINVRGGQYGRTLAFVINGVRTEYKIAQGDKPEHVQETDAQWLVKKLAGLARANDAFKDWKFNEGAGFIHVIAPGNQTINSLSTEDGYANQLMNAVMHTSQSFSKLPIEAPNGYTVKIVGDTSKTSDMFYVQYDNVKKVWKEVAGWGVEKGLNGATMPHALVRQSDGSFQMQVLPWAQRSCGDMDTNPTPSIVDQKINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSASGILSPKSVELNLTTEFDVSDRARPYGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSGTENFISVLSANAPSKIFLYKFLYLNEEIAQQSWSHWELGSNVTVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFDSEPYRLYIDNKIKYVIPKGAYNDDTYTTTIKPVDIYGMKYWKGKFYIVASDGLVSWFEPPRGGWPNGVPVLSMSGNREGETIYIGLAIDFRYVFSKFLIKKTADDGSTATEDIGRLQLRRAWVNYEDSGAFTVEVENTSRLFRYDMAGARLGSNALRAGGLNVGTGQFRFPVAGNAQLNEVRIISDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 88179,54410 Da
isoelectric point:7,16492
aromaticity:0,11237
hydropathy:-0,26566

Domains

Domains [InterPro]
IPR058003
TTP
1–792
IPR058003
WYD65252.1
1 792
Architecture
TTP
TTP 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYD65252.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9939
Central domain 141 344 205 0,1264
C-terminal 345 792 447 0,2101
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-344
C-terminal
345-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ETEP21B
[NCBI] 		3117681 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYD65252.1 [NCBI]
Genbank nucleotide accession
OR979722 [NCBI]
CDS location
range 22862 -> 25240
strand +
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTAAAAGGCGGTATCAGTCAACAGCCTAACATCTTAAGGTTCCCCGAACAGGGTTCCGAACAGATTAACGGCTGGTCATCCGAGACCGAGGGCTTACAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTGCTAAGCCGCTTGTTCACCTCATCAACCGCGATAGCGTCGAACAGTATTACGTTGTGTTCACCGGACAGGGAGTCCGAGTGTTTGACCTGAATGGTAAAGAGTATGCTGTGAAGGGTGACTTGTCATATGTCAAAGTTGGGAACCCTCGTGATGACCTGCGAATGGTCACAGTGGCTGACTACACGTTTATCGTTAACCGCAACATGGTTGTACGTGCTGACACTGCTCCTATCTATACCCTGAAGGAGAATGGTGACTGCTTGATTAACGTGCGTGGTGGACAGTATGGTCGCACCTTGGCTTTTGTAATCAACGGTGTTCGTACCGAGTACAAAATCGCACAGGGTGATAAGCCAGAACACGTACAGGAGACTGACGCGCAGTGGCTCGTTAAGAAACTTGCTGGACTCGCTCGCGCCAATGACGCTTTCAAGGACTGGAAGTTCAACGAGGGTGCTGGATTCATTCATGTGATTGCTCCGGGAAACCAGACGATTAACTCTCTGTCAACCGAGGATGGCTACGCTAACCAATTGATGAACGCAGTGATGCACACCAGCCAGTCATTCAGTAAGTTGCCAATCGAGGCTCCTAATGGGTACACTGTGAAGATTGTTGGCGACACCTCTAAGACTTCCGATATGTTCTATGTCCAGTATGACAACGTGAAGAAAGTCTGGAAGGAAGTCGCCGGATGGGGAGTTGAGAAGGGTCTCAATGGTGCCACTATGCCACACGCTTTGGTACGTCAATCAGACGGTTCCTTCCAGATGCAGGTTCTACCGTGGGCACAGCGCTCATGTGGGGACATGGACACTAACCCGACTCCTTCTATCGTAGACCAGAAGATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCCCGTACCTCCAAGTATTTCTCACTGTTCCCTGCGTCAGTGGCTAACCTGTCAGATGATGACCCGATTGATGTGGCTGTATCTCACAACCGTATCTCAATCCTGAAGTATGCCGTACCGTTCTCCGAAGAGTTGCTGCTATGGTCTGACCAAGCACAGTTCGTTCTGTCTGCCTCTGGTATCCTCTCACCGAAGTCTGTAGAGTTGAACCTTACGACTGAGTTCGATGTGTCCGACCGTGCGCGCCCTTATGGTGTTGGCCGTGGTGTGTATTTTGCGTCACCTCGTGCCTCCTATACATCACTGAACCGCTACTATGCTGTACAGGACGTAAGTTCAGTTAAGTCTGCTGAGGATATGAGTGCTCACGTTCCAAGCTATATCCCCAACGGTGTGTTCTCCATTCGTGGTTCTGGTACTGAGAACTTTATCTCTGTGCTCTCTGCGAACGCCCCAAGTAAAATCTTCCTGTACAAATTCCTGTACCTAAACGAAGAGATTGCACAACAGTCGTGGTCACATTGGGAACTTGGAAGTAACGTAACGGTTCTGGCTTGTGACTCTATAGGCTCAACGATGTACCTAGTGTTGCGCAATCAGTCACACACTTGGATGTGCCGAGCACACTTTACGAAGAACAGCATTGACTTCGACAGCGAGCCTTACCGCTTGTATATTGACAACAAGATAAAGTATGTGATTCCTAAAGGTGCCTACAACGATGACACTTACACGACCACTATCAAGCCTGTGGACATCTATGGGATGAAGTATTGGAAGGGTAAGTTCTACATCGTAGCATCTGACGGTCTGGTCTCGTGGTTCGAGCCACCTCGTGGTGGATGGCCTAATGGTGTCCCTGTGTTGTCAATGAGTGGGAACCGAGAGGGTGAGACGATTTACATTGGGTTGGCTATAGACTTCCGTTATGTGTTCTCTAAGTTCCTCATTAAGAAGACCGCCGATGATGGTTCGACAGCTACCGAGGATATTGGGCGCTTGCAGCTTCGCCGTGCGTGGGTCAACTATGAGGACTCCGGTGCGTTCACTGTGGAGGTTGAGAACACCTCTCGACTCTTCAGATACGACATGGCTGGTGCTCGCTTGGGTTCCAATGCTCTACGTGCTGGTGGACTTAACGTTGGCACTGGTCAGTTCCGATTCCCGGTTGCTGGAAACGCACAGTTGAACGAAGTAAGGATTATCTCTGACCACACTACACCGCTTAACGTGATTGGTTGTGGCTGGGAAGGTAACTACCTACGACGCTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c2ef0da11228cf91a437210bcb063aa8322c09b788cd43b3b59582fd60d7b868
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3162
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Determinants of phage host range in porcine enterotoxigenic Escherichia coli Gambino,M., Broendsted,L. and Jensen,C.M. 2024-07-24 — GenBank