Protein

View in Explore
Genbank accession
APU00302.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKVVGSYESVVRGASEQVPQQRFSGQHYEQVNMLSDPVHGLGRRQGSVTMDERLLAGLTMTADRKRYARNYREFSFFVAGTEYSLVYQSAERPHGDSLPFAFCLNKDTGKFLNVNIVGGAAMDPWVDGGVSAITSVGQFLVLAGNKVAPQYSLTDGYASHGQQGVAQVRGGAYSRTYTITVRRASDGVVFNGSYTTMASSYPYPLNTSDIPAGASDYQKQVNDRVYAYNSAVTKWIGDALADIQPQNIAQKLMDSLASQGFVNIGRLGGSIYMDNITALTVGDGADGSTFRAAFNELDDPAKLPSVHAPYKVVRIAPKGAEPYYMVAYPENPSNGSWQNVSWKEGPAQTVTPGQCFALAVVSNDGNTLHIAASASALQAASGITTPGFNASAAGSVNDEGGLPYFFGRVVSCLTMFQDRLCIIADGVIFASRTGDYFNWFRKSKLTLADDDPVEMYALGAEDDIIRASVSYNKDLFLFGERKQYAVSGRTPLTPKSAAVSATASERDATHAHPVVLGNLIFYGKYSPTTNQLGPSPYSAAVSQFQLGLFQDVPETFKVSQQLSTYLRGRPIAFAALAQPHTVILRTDGYDYGIYLYNFLDQPGSQTRAFDAWHRWEWAPEVGQIIGVCSYKTTLYVYTLRTVGTGTWVACEQFTMDATLSDRPYLDMQRSGAEFEANTGSMRNDGSAPATACVAATADAGSLKYLGAPAAEYDDFVSETFPDNPEPPVTVGVGYDSYVDLTPPFTRDRNGNAIVNGRLIINRYSVSVAQTGGLNGFVRNTATEVEARVMRFNGRRVGLSNNLPSTQPVSNTVLSVPVARANTEHRVVLKSVTWLPATITAIEWVGQFFNNAQRV
Physico‐chemical
properties
protein length:855 AA
molecular weight: 92701,60790 Da
isoelectric point:5,86007
aromaticity:0,10760
hydropathy:-0,20140

Domains

Domains [InterPro]
IPR058003
TTP
1–51
IPR058003 IPR058003
DC_0058
STR
1–855
DC_0058
APU00302.1
1 855
Architecture
STR
STR 1-855
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APU00302.1
1 855
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,9530
Central domain 157 388 233 0,3149
C-terminal 389 855 466 0,2487
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-388
C-terminal
389-855

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RS-PII-1
[NCBI] 		1932892 Uroviricota > Caudoviricetes > Autographivirales > Sukuvirus > Sukuvirus RSPII1
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APU00302.1 [NCBI]
Genbank nucleotide accession
KY316062.1 [NCBI]
CDS location
range 16367 -> 18934
strand -
CDS
ATGACGAAGGTTGTCGGTTCCTACGAAAGCGTGGTGCGCGGTGCGTCCGAGCAAGTCCCGCAGCAGAGGTTCTCGGGCCAGCACTACGAGCAAGTCAACATGCTGTCGGACCCGGTGCATGGGCTGGGTCGCCGGCAGGGTTCTGTAACGATGGACGAGCGGCTGCTCGCCGGCCTCACAATGACGGCGGATCGCAAGCGATACGCCCGGAACTACCGGGAGTTCAGTTTCTTCGTCGCCGGTACGGAGTACAGCCTCGTGTACCAGTCCGCAGAGCGGCCCCACGGTGACAGCCTCCCGTTCGCATTCTGTCTGAACAAGGACACAGGCAAGTTCCTGAACGTGAACATCGTCGGAGGCGCTGCGATGGACCCTTGGGTGGATGGCGGCGTATCCGCGATTACGTCCGTGGGCCAGTTCCTCGTGCTCGCCGGCAACAAGGTGGCCCCGCAGTACAGCCTCACGGACGGGTACGCCTCGCACGGACAGCAGGGCGTCGCCCAGGTGCGAGGAGGCGCGTACAGCCGGACCTACACCATCACGGTACGCCGCGCTTCGGACGGGGTAGTGTTCAACGGCTCGTACACGACGATGGCCTCCAGCTACCCGTACCCGCTGAACACGTCGGACATCCCGGCTGGTGCCTCGGACTACCAGAAGCAGGTGAACGACCGGGTGTACGCCTACAACTCCGCCGTGACGAAGTGGATCGGTGACGCGCTGGCGGACATCCAGCCGCAGAACATCGCACAGAAGTTGATGGACAGCCTCGCATCGCAGGGGTTCGTCAACATCGGACGCCTCGGCGGCAGTATCTACATGGACAACATCACGGCGCTGACCGTTGGCGACGGTGCGGACGGCTCAACGTTCCGGGCTGCGTTCAACGAGTTGGACGACCCGGCGAAGCTACCTAGCGTCCACGCGCCGTACAAGGTTGTGCGAATCGCTCCGAAGGGGGCCGAGCCGTACTACATGGTGGCGTACCCCGAGAACCCGTCCAACGGGTCATGGCAGAACGTCTCGTGGAAGGAGGGGCCGGCGCAGACCGTGACTCCGGGCCAATGCTTTGCGCTGGCCGTGGTGTCAAACGACGGCAACACGCTGCACATCGCAGCATCGGCGTCCGCGCTACAGGCTGCATCGGGCATCACGACTCCCGGCTTCAATGCCTCGGCGGCTGGCTCAGTCAACGACGAAGGCGGCCTACCGTACTTCTTCGGGCGCGTGGTGTCCTGCCTGACGATGTTTCAGGACAGGCTGTGCATCATCGCGGACGGCGTGATCTTTGCCTCCCGCACTGGGGACTACTTCAACTGGTTCCGCAAGTCGAAGCTGACGCTGGCCGACGACGACCCGGTGGAAATGTACGCGCTGGGGGCGGAGGACGACATCATTCGGGCCTCCGTGAGCTACAACAAGGACTTGTTCCTGTTCGGGGAGCGCAAGCAGTACGCGGTGTCAGGTCGCACACCGCTAACGCCGAAGTCGGCAGCAGTGTCGGCCACGGCCAGCGAGCGGGACGCGACGCACGCGCACCCGGTGGTGCTGGGAAACCTGATCTTCTACGGCAAGTACAGCCCGACGACGAACCAGCTTGGGCCGTCCCCGTACTCGGCGGCAGTGTCGCAGTTCCAGCTTGGCCTGTTCCAAGACGTGCCTGAGACGTTCAAGGTGAGCCAGCAGTTGTCCACGTATCTGCGTGGGCGGCCTATCGCATTCGCCGCGCTGGCGCAGCCGCACACGGTCATCCTCCGCACGGACGGGTACGACTACGGCATCTACCTGTACAACTTCCTCGACCAGCCCGGTTCACAGACCCGCGCCTTCGATGCCTGGCATCGCTGGGAGTGGGCACCGGAAGTGGGGCAGATCATCGGCGTGTGCTCGTACAAGACGACCCTGTACGTGTACACGCTGCGCACGGTCGGCACGGGGACGTGGGTGGCCTGTGAGCAGTTCACGATGGACGCGACCCTGAGTGACCGCCCGTACCTCGACATGCAGCGCAGCGGCGCGGAGTTCGAGGCCAACACAGGCTCGATGCGGAACGACGGCAGCGCGCCGGCCACGGCTTGCGTCGCAGCCACGGCAGACGCCGGCAGCCTCAAGTACCTCGGGGCACCGGCAGCCGAGTACGACGACTTCGTGTCGGAGACGTTCCCCGACAACCCGGAACCCCCGGTCACGGTCGGCGTGGGGTACGACTCATACGTGGACCTGACTCCACCGTTCACCCGCGACCGCAACGGCAACGCGATTGTGAACGGGCGGCTCATCATCAACCGCTACAGCGTGAGCGTGGCGCAGACGGGCGGCCTCAACGGCTTCGTCCGTAACACCGCAACGGAAGTTGAGGCCCGAGTGATGCGCTTCAACGGTCGCCGCGTGGGCCTGTCGAACAACCTGCCTAGCACCCAGCCGGTGTCTAACACCGTCCTGAGTGTCCCTGTGGCGCGTGCCAACACCGAGCACCGGGTCGTCCTGAAATCGGTGACGTGGCTCCCCGCGACCATCACGGCAATCGAGTGGGTGGGTCAGTTCTTCAACAACGCCCAGCGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
42631facc09c311536d1eabbee8e87f68d7b0da28f2c5424831a3688e2a309a4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8452
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Whole Genome Sequencing Analysis of a Novel Lytic Bacteriophage RS-PII-1 infecting Ralstonia solanacearum Su,J., Liu,J., Yu,H., Guo,Z., Sun,H., Fan,G., Gu,G. and Wang,G. 2017-09-19 — GenBank