Protein

View in Explore
Genbank accession
ADO98168.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MSKQGISTGSAPNDGTGDTLLAGTIKINNNFNEIYDIFGDGSNLVSFVSFASTAGYSTNCGIASTSVLAGLAASVTDNIDINTSGVVTSSYADVGKITIQQPGAITDGPIEVGFAATMFRIKADGMVGIGTSLPTSQLEVASFSNEKPTIWSVAKGNGHGLRVSDAAISDNKSFVVTNEAYTGIGSTAPRCRLDVRGDIQVSGASTLMDQVNFNSDITEKVVGNFSDQLTVSAGGTFTFDLSQGTVVLGGITTSVTSWNFTNVNPDNSKATTVTLINNAGIGYTYGDSCTVNGASIANGIKWVGGNPPPATANDDILTFSIVRDSTGVTRVYCSSSINII
Physico‐chemical
properties
protein length:340 AA
molecular weight: 34947,30230 Da
isoelectric point:4,40419
aromaticity:0,07059
hydropathy:0,06912

Domains

Domains [InterPro]
IPR036240
STR
1–85
IPR036240 DC_1864
DC_0533
ATT
1–65
DC_0533
IPR008987
ATT
3–97
IPR008987
G3DSA:1.20.5.960
Unmapped
13–43
G3DSA:1.20.5.960
ADO98168.1
1 340
Architecture
ATT
STR
ATT 1-97 | STR 98-340
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADO98168.1
1 340
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,3407
Central domain 72 270 200 0,2011
C-terminal 271 340 69 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-270
C-terminal
271-340

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO98168.1 [NCBI]
Genbank nucleotide accession
GU071098 [NCBI]
CDS location
range 66614 -> 67636
strand +
CDS
ATGTCTAAACAAGGGATTAGTACTGGTTCGGCTCCCAATGATGGGACTGGCGATACCCTATTGGCAGGGACTATTAAGATTAATAATAACTTCAACGAAATCTACGATATTTTCGGAGACGGATCTAACCTTGTAAGTTTTGTTTCTTTCGCTAGCACTGCTGGATATTCTACCAACTGTGGTATTGCATCCACATCAGTTCTTGCTGGTCTTGCAGCGAGTGTTACAGATAACATTGACATCAATACATCTGGTGTTGTAACATCAAGTTATGCAGATGTTGGTAAAATAACAATTCAACAGCCAGGTGCAATTACAGATGGACCTATTGAAGTTGGATTTGCTGCAACAATGTTCCGAATCAAAGCAGACGGTATGGTCGGCATTGGAACATCATTACCTACTTCACAATTAGAAGTTGCATCATTCTCAAACGAAAAACCAACTATATGGTCAGTTGCAAAAGGTAATGGACATGGATTGCGAGTATCCGATGCAGCGATATCAGATAATAAGTCTTTTGTAGTTACTAACGAAGCCTACACTGGTATTGGTTCTACTGCTCCTAGATGTAGATTGGATGTGCGAGGAGATATCCAAGTAAGTGGTGCAAGTACATTAATGGATCAGGTCAACTTTAACTCTGATATTACAGAGAAAGTTGTAGGAAACTTTAGTGATCAGTTGACTGTAAGTGCAGGCGGTACGTTCACATTTGACTTATCACAAGGAACAGTTGTTCTAGGTGGTATAACTACATCTGTTACTTCTTGGAACTTCACTAATGTCAACCCTGACAACAGTAAGGCAACAACAGTTACACTAATCAATAATGCTGGAATCGGATACACATACGGAGATTCCTGTACAGTGAATGGAGCATCTATTGCAAACGGTATTAAATGGGTTGGTGGAAACCCTCCGCCTGCAACGGCCAATGATGATATTCTAACCTTTAGTATAGTGCGTGATAGCACTGGTGTTACCAGAGTCTATTGCAGCAGTTCTATTAACATTATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e388fc9a7955b9741ac5663f53eea5bf57bd6546bbf103ae154ed69212b3de9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7153
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank