Protein

View in Explore
Genbank accession
YP_012143712.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MALKTKIIVQQILNIDDTTTTASKYPKYTVVLGTSISSITAGQLTAAVEASAASAAAAKDSENAAKTSEINAKTSETNAKTSETNALTSKNAAAASQTVAATSATNAKTSETNAKTSETSAKASEIAALASKNAAKTSETNAKTSETNAKTSETNALASKNAAAASQTAAKTSETNAEVSETNAKASELAAANSATNAATSETNALASKNAAATSQTAAKTSETNAKTSETNAKTSETNAKTSETSAKTSETSAKTSETKAAAYAAAAKNSETNAALSAASASDSKGFRDEAETFAIQASTSALAAKNSETKAKTSEINSKASEDAAKLAQQAASGSASTAMQAVTTVQNLKSDVEQLKSDTQTIKDGAVGEINTAKTDATTSITQSKDAALTAIGSAKSSAIGGVNTAKVAGVNAINTAKTESLNAMTPLKEAAEDAAALATQKATTATEQATSAAGSATTASEKATNATSAADRAETAAASAEQVMQASLKKDQNLKDLTNKSAARATLNVQGAKCVTSTAPGDFNALSSPDDKLNLLIANNGTWGVQSIEGDIKPLAVERGGTGATNVIQARNNLGIGETAIPVFRGVNLTEKNGANSGILYLINKNAEGMQLSYSRIYNEIQGATAKTTIQVTREGGDNNYYQFDEHGNVLNYNSITVGRGIGNALGDNSLVIGDHDTGLKWDRDGHISAFADSARIFAWTPSGINTYRVISSYVDDNARGMYVNGVRRGDPNALIAGQVEGGNFSAWRERASGLLVEHTSFDAAVGVFKSVYWGKLGYQEWILFYGLPEVLRFIFMLVELIMFLMLLVMVAPQTGLVDLTLD
Physico‐chemical
properties
protein length:827 AA
molecular weight: 85113,81570 Da
isoelectric point:5,52887
aromaticity:0,04232
hydropathy:-0,31040

Domains

Domains [InterPro]
DC_0608
ATT
2–166
DC_0608 DC_0401 Coil DC_1675
DC_0415
STR
238–402
DC_0415
YP_012143712.1
1 827
Architecture
ATT
STR
ATT 2-166 | STR 177-765 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012143712.1
1 827
Domain Start End Length (AA) Confidence
N-terminal 1 665 665 0,7210
Central domain 666 816 152 0,3234
C-terminal 817 827 10 0,1296
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-665
Central
666-816
C-terminal
817-827

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GRNsp8
[NCBI] 		2948589 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus GRNsp8
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012143712.1 [NCBI]
Genbank nucleotide accession
NC_106733 [NCBI]
CDS location
range 27816 -> 30299
strand +
CDS
ATGGCACTTAAAACAAAAATTATTGTACAGCAGATTCTTAACATAGATGACACTACAACTACTGCTAGTAAATATCCTAAGTATACAGTAGTTTTAGGTACTTCTATTAGTTCTATTACTGCTGGTCAACTAACAGCGGCTGTTGAGGCCTCTGCTGCTTCTGCTGCGGCAGCAAAAGATTCTGAGAATGCTGCAAAAACATCAGAAATCAATGCAAAAACTTCTGAGACAAACGCTAAGACTTCCGAGACTAATGCATTAACTAGTAAAAATGCGGCTGCAGCCTCTCAAACAGTCGCAGCAACTTCTGCTACAAATGCTAAAACTTCAGAAACTAATGCCAAGACTTCTGAAACTAGTGCTAAGGCTTCTGAAATAGCAGCTTTAGCAAGCAAAAACGCAGCAAAAACTTCTGAGACTAATGCCAAGACTTCTGAAACTAATGCCAAGACTTCTGAAACTAATGCATTAGCAAGTAAAAATGCGGCAGCAGCTTCACAAACAGCAGCAAAAACTTCTGAGACTAACGCTGAAGTTTCAGAGACTAACGCTAAAGCTTCCGAATTAGCTGCCGCTAATTCGGCTACGAATGCTGCTACTAGCGAAACTAATGCATTAGCAAGTAAAAATGCTGCTGCTACATCACAAACAGCAGCAAAAACTAGTGAGACTAATGCAAAAACTAGTGAGACTAATGCAAAAACTTCTGAAACTAACGCGAAAACTAGTGAGACTAGTGCAAAAACTAGTGAGACTAGTGCAAAAACTAGTGAGACTAAGGCAGCAGCATACGCGGCAGCCGCAAAAAATAGCGAGACTAATGCTGCCCTATCCGCTGCCTCTGCCTCTGACTCCAAAGGGTTCAGAGATGAAGCAGAAACATTCGCTATACAAGCTTCTACATCAGCATTAGCAGCAAAAAACTCAGAAACTAAGGCAAAGACTAGCGAAATTAACTCAAAAGCTAGTGAAGACGCTGCTAAGTTAGCTCAGCAAGCCGCATCAGGTAGCGCGAGTACTGCTATGCAAGCGGTGACCACAGTACAGAATCTTAAGTCCGACGTTGAGCAGTTAAAGAGCGACACGCAAACTATTAAAGACGGTGCTGTTGGAGAAATTAATACCGCTAAAACGGATGCAACAACCAGCATTACCCAGTCAAAAGACGCAGCGTTAACGGCAATAGGAAGTGCTAAATCTAGCGCGATTGGTGGTGTTAACACAGCCAAGGTTGCTGGTGTTAACGCTATTAATACTGCTAAAACTGAATCACTGAACGCAATGACACCGCTGAAAGAAGCAGCAGAAGATGCTGCGGCTTTAGCTACGCAAAAGGCTACCACAGCTACGGAACAGGCTACGTCGGCTGCTGGTAGCGCTACAACGGCAAGCGAGAAAGCTACTAACGCTACCAGTGCAGCAGATAGAGCAGAGACAGCGGCTGCATCCGCAGAACAGGTTATGCAAGCGTCTTTGAAAAAGGACCAGAACCTTAAAGACCTTACTAATAAAAGCGCGGCGCGGGCTACCTTAAACGTGCAAGGCGCAAAATGTGTTACTAGCACCGCGCCGGGAGATTTCAATGCGCTATCTTCACCTGATGACAAACTAAACTTGCTGATTGCTAATAACGGCACCTGGGGCGTGCAAAGCATAGAGGGGGATATTAAGCCGTTAGCTGTTGAACGCGGGGGCACAGGTGCAACAAACGTAATCCAAGCAAGGAATAATCTTGGAATTGGTGAAACTGCTATACCTGTTTTTAGGGGTGTGAATCTTACTGAAAAGAATGGTGCTAATTCCGGCATTCTTTACCTAATAAACAAGAACGCAGAAGGTATGCAACTTTCATATTCCAGGATCTACAATGAAATTCAAGGAGCAACCGCTAAAACAACAATACAAGTAACCAGAGAAGGTGGCGATAATAACTATTATCAATTTGACGAGCATGGTAATGTACTAAACTATAACTCTATAACAGTAGGTCGTGGTATTGGTAACGCTCTTGGTGATAATTCCTTGGTTATTGGTGATCATGACACTGGTTTGAAATGGGATCGTGATGGTCACATAAGCGCGTTTGCTGATTCAGCGAGAATATTTGCATGGACTCCATCAGGAATAAACACTTACAGGGTCATATCATCTTATGTTGATGATAACGCAAGGGGCATGTATGTAAATGGAGTTAGGCGCGGAGATCCAAACGCTCTTATTGCTGGTCAAGTTGAAGGTGGTAATTTTAGTGCGTGGCGTGAGCGTGCGTCTGGTTTGTTGGTAGAGCATACTAGTTTTGATGCTGCTGTCGGCGTATTTAAATCTGTTTATTGGGGAAAGCTTGGATATCAGGAATGGATTCTGTTTTATGGTCTTCCGGAGGTGCTGAGGTTCATCTTTATGTTGGTGGAGCTGATTATGTTTTTGATGCTGCTGGTAATGGTAGCGCCTCAAACTGGGTTAGTAGATCTGACATTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
13ca940eefa07a3d7f6435cab0679f919a4252c3fff7f83aac7e5ed3dd36c78a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5693
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A cocktail of three virulent phages controls multidrug-resistant Salmonella infection in poultry Li,Y., Lv,P., Shi,D., Zhao,H., Yuan,X., Jin,X. and Wang,X. 2022-07-06 — GenBank