Protein

View in Explore
Genbank accession
WBK39840.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MKSLNEEILFQKDFDKIILPAGEFIAEEPVVISGRKNPDICGSGIGRTRLVAASGIDCVIKFMFAHEIKISDLLIHGSVGAAKHGIVIEDSSYVVLDRVKAVSASDCGIVLKDGWMNRLSNCTSAYNGGSGIEVINQNCAMLTGCSIAANGRYGMLCKNTRASSINCCYFEDNLMEGALFQHSFLGSSISGCGFESNGGSSDVLFNGNHLDETMHASHYPCLGISVDGNYHTINGNERVAYVVAAGCDVSTGNCFSTNSRIIH
Physico‐chemical
properties
protein length:263 AA
molecular weight: 28052,51350 Da
isoelectric point:5,53864
aromaticity:0,07224
hydropathy:0,08821

Domains

Domains [InterPro]
IPR011050
STR
10–256
IPR011050
IPR012334
STR
11–262
IPR012334
IPR039448
ENZ
68–208
IPR039448
WBK39840.1
1 263
Architecture
STR
STR 10-262 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBK39840.1
1 263
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0019
Central domain 11 252 243 0,9000
C-terminal 253 263 10 0,4740
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-252
C-terminal
253-263

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacteraceae phage LS06-2018-MD06
[NCBI] 		3003839 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBK39840.1 [NCBI]
Genbank nucleotide accession
OP947162.1 [NCBI]
CDS location
range 24393 -> 25184
strand -
CDS
ATGAAGAGCCTCAATGAAGAGATTCTATTTCAGAAAGATTTCGACAAGATTATTCTTCCAGCCGGGGAGTTTATTGCAGAGGAACCGGTTGTCATATCTGGCAGAAAGAATCCAGACATATGTGGCAGTGGAATTGGTAGGACAAGGCTTGTCGCGGCCAGCGGAATAGATTGTGTGATAAAATTCATGTTTGCCCACGAGATTAAAATCTCAGACCTTTTGATTCATGGAAGCGTTGGCGCCGCAAAACACGGCATAGTAATCGAAGACTCTTCATATGTGGTTCTTGACAGGGTAAAGGCTGTCAGCGCAAGCGACTGTGGGATTGTACTAAAAGACGGATGGATGAACAGGCTTTCCAACTGCACTTCTGCGTATAATGGCGGCAGCGGTATCGAGGTAATAAATCAGAATTGTGCAATGCTAACAGGTTGTTCTATCGCTGCGAATGGAAGATACGGCATGCTATGCAAAAACACAAGAGCATCCAGCATTAACTGTTGCTACTTTGAGGATAACCTGATGGAAGGCGCACTGTTTCAGCACAGCTTTCTAGGCTCGTCAATTTCCGGTTGCGGATTTGAGTCGAACGGTGGCAGCAGCGATGTCCTTTTCAATGGAAACCATCTAGACGAAACTATGCATGCATCGCACTACCCATGCCTTGGTATATCTGTCGATGGCAATTATCACACAATAAACGGGAATGAGAGGGTTGCATATGTAGTGGCCGCCGGCTGTGATGTGAGCACTGGGAACTGCTTCTCTACAAACAGCAGAATTATTCACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e82913def4aa16de63ab2b94d2e3a7bf8519d5b0b09f1f956d44cace6c11302
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank