Protein

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UniProt accession
W5QUG6 [UniProt]
Protein name
Polygalacturonase
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MIYVKDFTGITEAVKIQNAINAAAVSTSPSKTVMLEEKDYYLESSITLLNDVELLFGYRSRLVIGGNFPVLLIGRNASVTNPFIAIDAPNFDSPVFYLDGKNKYYNTWNKTAIKDGVVLNWSGSHKGIGIRFYSGGTDHEISFVDVSNIKLVGLRKGIELEAKAPASGMAWVNANRFNNISIEDCVEMITLDSSETIPNECSGNIFSGLQLQPSTATTKVLKVSGQHNRFDGMLWDISLIPTAKFVDVTANSSYTKIDFNRSLPSTKVQDSGAYTILQ
Physico‐chemical
properties
protein length:278 AA
molecular weight: 30516,28290 Da
isoelectric point:5,67790
aromaticity:0,09712
hydropathy:-0,06043

Domains

Domains [InterPro]
IPR012334
STR
11–270
IPR012334
IPR011050
STR
15–204
IPR011050 DC_0399
W5QUG6
1 278
Architecture
STR
STR 11-278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
W5QUG6
1 278
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,8602
Central domain 12 267 257 0,9943
C-terminal 268 278 10 0,2355
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-267
C-terminal
268-278

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage BPS10C
[NCBI] 		1277886 Uroviricota > Caudoviricetes > Herelleviridae > Wphvirus > Wphvirus BPS10C
Host Bacillus cereus
[NCBI] 		1396 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGI12265.1 [NCBI]
Genbank nucleotide accession
KC430106 [NCBI]
CDS location
range 156910 -> 157746
strand -
CDS
ATGATATATGTGAAGGATTTTACTGGAATAACTGAAGCAGTTAAGATACAAAATGCAATTAATGCAGCAGCTGTATCAACTTCTCCATCCAAGACCGTAATGCTAGAAGAGAAGGATTATTACCTTGAGTCATCTATCACTCTGTTAAACGATGTAGAATTACTGTTTGGCTATCGTTCAAGACTAGTCATTGGTGGTAACTTCCCTGTTTTATTGATAGGGCGAAATGCTTCTGTTACAAATCCTTTCATAGCTATCGATGCTCCGAACTTTGATTCACCTGTCTTTTATCTGGATGGTAAGAATAAATATTACAATACATGGAATAAGACAGCGATAAAAGATGGTGTAGTTCTTAACTGGTCTGGTTCGCATAAAGGAATAGGTATCAGGTTCTATTCTGGAGGTACTGACCATGAGATTTCATTTGTGGATGTGTCCAACATTAAACTTGTCGGTCTAAGAAAAGGTATTGAGTTAGAGGCTAAAGCCCCAGCATCAGGAATGGCATGGGTAAACGCTAATCGATTCAATAACATCTCCATAGAGGATTGCGTAGAAATGATTACACTGGATAGCAGCGAGACAATACCGAACGAATGTAGCGGTAACATCTTCTCAGGTCTTCAGTTACAACCATCTACTGCAACAACAAAAGTCTTGAAAGTAAGTGGGCAGCATAACCGTTTCGATGGTATGCTTTGGGACATCTCTTTAATACCTACAGCTAAGTTTGTAGATGTTACAGCGAACAGCTCCTACACGAAGATAGATTTCAATCGTTCATTGCCTAGTACGAAAGTACAGGATAGTGGAGCATATACAATTTTACAATAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
10836e18e9ee92f4e0b997fd1a210f7876c42b119a0f0f89d6fc56f8e7c8f242
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9220
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50