Protein

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Genbank accession
YP_009277012.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAIKKNPYIVEGGLEVREGVAKMPSGTSGSRPVPQGPGEIRTNSSTGHTELSTGISNPEFRPIEYQYSWVGVTTDYNVPVKTRMSYAVNTTQGPVRVKLPASPLDKQSVVFTDTKGSFQLNNLTIDPNGKPIMGVVQPYVCRDNWMTIEIIYVDSVAGWNIRYGKDILTDFQLGDAAVRNVGFNFAQGNQLANVMEVGAFGIGGQIGNAQAVTRLWPSNDLNDVNRTGVYTAAGSANAPQGDTAGMVFHMQRNDTGGLYAYQQYVAAGGVFYRVRVNNGGWSDWRSSAGGLFTLNGVSIDGLSDTGNYYCASNCTGTPLAGQAGYLVVMTQAQGTTIHRFVISTGNRLRVFTRRVVGGVWTPWIREVNDDYVEYLPKAKPSIRLDFVNGTLDSRFTFTRATAGNYVDVDGLIKPAGVNVPRYHHDPMTGERLGIMIEGNRTQLLSNSKNATFPNNQGVASPYNGPIIFTNSTPSTFVGNISGPVSGYLALTPTSGATLTGGRAAASIFLRRNSPDVKGFLMQIPAYATGNNATISVYFDFTNMSTNQVEGSAAVPHFKRFRNDWYRIGLSWNSLSGPMANPFFVYPYNKTPTGDAFLMDLTNYRGVEVFTWDCMQVENGDGCSSPVHSTNGPVNRAQDFLSYDVPSGVFGMTSFGTIVFQGHDFGPGDPASRAFRFTDGTTSNNIYGTKYNVSGGVSSLRAEFVQNGSAIGVMTVPNSTFRPNLRMACSWGSDAGTVASGAINGVAGSFNTNPAVPFSINKLWIGSDGATNAFFGAISSLFFYNVYSNRDVVENTSEL
Physico‐chemical
properties
protein length:798 AA
molecular weight: 86054,18490 Da
isoelectric point:8,04380
aromaticity:0,11153
hydropathy:-0,20890

Domains

Domains [InterPro]
DC_1064
ATT
25–194
DC_1064 cd19958 DC_1143
IPR027411
Unmapped
67–164
IPR027411 cd19958
IPR036240
STR
74–157
IPR036240 DC_0678 DC_1416
YP_009277012.1
1 798
Architecture
ATT
STR
ATT 25-194 | STR 195-798
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009277012.1
1 798
Domain Start End Length (AA) Confidence
N-terminal 1 624 624 0,5411
Central domain 625 787 164 0,4352
C-terminal 788 798 10 0,9912
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-624
Central
625-787
C-terminal
788-798

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSP15
[NCBI] 		1785960 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009277012.1 [NCBI]
Genbank nucleotide accession
NC_030948 [NCBI]
CDS location
range 43438 -> 45834
strand -
CDS
ATGGCAATTAAAAAGAATCCTTACATTGTGGAGGGTGGCCTAGAGGTTCGTGAAGGCGTTGCTAAAATGCCTTCCGGGACTTCTGGAAGCCGTCCCGTTCCACAAGGTCCGGGTGAAATTAGAACAAACTCTTCAACCGGACACACGGAATTGTCAACGGGTATTTCTAATCCTGAGTTCCGTCCGATTGAATATCAATACTCATGGGTTGGCGTAACGACAGATTACAACGTTCCTGTGAAAACTCGTATGTCCTATGCAGTCAATACGACTCAGGGGCCTGTACGTGTGAAACTTCCTGCTTCCCCACTGGATAAACAGTCTGTGGTGTTCACGGACACGAAGGGAAGTTTCCAGCTTAACAACCTGACGATTGACCCGAACGGTAAGCCGATCATGGGTGTGGTTCAACCTTATGTGTGCCGGGATAACTGGATGACGATTGAAATCATCTACGTGGATTCCGTTGCAGGTTGGAACATCCGTTATGGTAAGGATATCTTGACAGACTTCCAATTGGGTGATGCTGCTGTTCGCAACGTTGGTTTCAATTTTGCGCAGGGTAATCAGCTTGCTAACGTGATGGAAGTTGGTGCATTTGGTATCGGTGGACAGATTGGAAATGCTCAAGCCGTAACGCGCCTATGGCCTTCCAATGACCTGAATGATGTGAATCGTACTGGTGTCTACACTGCTGCGGGATCGGCCAATGCGCCTCAGGGTGATACGGCTGGTATGGTCTTTCATATGCAACGCAATGACACGGGTGGACTGTATGCCTATCAGCAATATGTTGCGGCTGGTGGTGTCTTCTATCGCGTGCGCGTGAATAATGGTGGTTGGTCGGATTGGCGTTCGTCTGCTGGTGGCCTGTTCACTCTGAATGGCGTAAGCATTGATGGTCTTTCTGATACTGGTAACTACTACTGCGCTTCTAACTGTACGGGTACACCGCTTGCCGGTCAGGCTGGTTATTTGGTGGTGATGACACAGGCTCAGGGAACAACGATTCATCGATTCGTTATTTCTACTGGTAATCGTCTGAGGGTCTTTACTCGTCGTGTGGTTGGTGGTGTTTGGACTCCGTGGATTCGTGAAGTTAATGATGACTACGTGGAGTATCTACCAAAAGCCAAACCTTCTATCCGTCTGGATTTTGTGAATGGTACATTGGATAGTCGTTTTACCTTTACCCGTGCTACTGCTGGTAACTATGTTGATGTTGATGGCCTGATTAAGCCTGCCGGTGTGAACGTTCCGCGTTATCACCATGACCCGATGACGGGTGAACGTCTGGGGATCATGATTGAGGGCAACCGTACTCAACTTTTGTCGAATTCTAAGAATGCAACTTTCCCTAACAATCAGGGTGTTGCTAGTCCGTACAATGGTCCTATCATCTTTACCAACAGCACACCATCTACCTTCGTAGGTAACATTTCTGGTCCTGTTTCTGGGTATCTGGCCCTTACTCCTACCTCTGGTGCAACATTGACTGGTGGCCGTGCCGCTGCTTCTATTTTCCTTCGTAGAAACAGCCCGGATGTGAAGGGATTCTTGATGCAGATTCCCGCATATGCGACCGGAAACAATGCAACGATCAGTGTCTATTTTGACTTTACGAACATGTCAACCAATCAGGTTGAGGGTTCTGCTGCGGTTCCTCATTTCAAGCGTTTCCGCAATGATTGGTATCGTATTGGTCTGTCATGGAATTCTTTGTCTGGTCCGATGGCTAACCCATTCTTTGTTTATCCATACAACAAGACGCCCACGGGTGATGCTTTCTTGATGGATTTGACTAACTATCGTGGCGTTGAAGTTTTCACGTGGGATTGTATGCAGGTTGAGAATGGTGATGGGTGCTCAAGCCCGGTTCATTCGACTAACGGCCCTGTAAACCGTGCTCAAGACTTCCTGTCTTATGATGTTCCGAGTGGTGTTTTCGGAATGACAAGCTTTGGGACTATCGTTTTCCAAGGACATGATTTTGGCCCGGGCGATCCCGCATCAAGGGCTTTCCGGTTTACGGATGGCACGACTTCTAACAATATCTATGGAACGAAGTATAACGTTTCTGGTGGGGTGTCTTCTCTACGTGCTGAGTTTGTTCAGAATGGTTCTGCAATCGGTGTGATGACGGTTCCCAATTCCACATTCAGACCCAATTTGAGAATGGCTTGTTCGTGGGGTTCTGATGCAGGAACTGTGGCATCTGGTGCTATCAACGGCGTTGCCGGGAGCTTCAATACCAATCCCGCTGTCCCCTTTAGCATAAATAAACTATGGATTGGCTCTGATGGGGCCACAAATGCATTCTTCGGTGCTATTTCTTCACTGTTCTTCTACAACGTTTATTCAAACCGTGATGTAGTGGAGAATACTTCCGAGCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
083bcf2e27fa361c124d7c3f1c3dfd2d3229a52411cda080b02e3be9e0655e97
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7870
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a phage RSP15 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2010-03 — GenBank