Protein

View in Explore
Genbank accession
QFP93635.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,52
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLSTLPITANFNNRVFATYVDVADATNHVLVNTEDGQLVVLSEDFGTVLHTGTYPYLQASNANAIQTGTLRGDLYLANTQQAPTLVHGTTTQQDPTKTGFFFVRVPAFSKDYDITLSNSTGTYTYTHRTPNGQGGGDADLAKPSYVVSQLVSLINAETGTHGITAHAFDAYMYLVSTTATLSATTNAGSTYATASNQSRVALLSDLPARLPTIADGTLCAVGTTPRSFTWYEYESSTSVWKEAGAYGSPTGFSGMPIKLSLDGTYTVSTPEYEGRLAGSDITNEDPGFIEHGLTGFGVYQGRLVILAGPEVCMSASGRPERWYRSTVTSLLTDDPINVFSGAATTTNFSHCVQFNKDLLLFSRSCQAVVPSSNAAITPATAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTESFAGILEMIPSNTTDSQYTSNDVTAHIPRYMPGSIRSITASTTSNSSVLLCTGDDRSLFVQDYLWSGDEKVQSAWHQWGVPYPIVCAWFVRDRVCLGMRDGTSIVVGTIEPQAGTTYLSYTRPFSDLYSLVTVSGGLTTVPQHLRGAYLSGAELFLTFADTSKGGMWVGIDSVDTGTWQVQTVRNVPDGQYFLGVRYMSVLTPTPPLVRDANGVVIGTSRTLLVRYELTLKDSGEFHAVVADSSRVLTDGTYSSLVYSNVELLPDEPTSATLGRVVIPVRAQAQETVATFEADSDTDLCILDIEYVLQYRARRKRL
Physico‐chemical
properties
protein length:776 AA
molecular weight: 83953,99420 Da
isoelectric point:5,20267
aromaticity:0,09149
hydropathy:-0,09923

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–775
IPR058003
QFP93635.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFP93635.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9854
Central domain 138 338 202 0,1381
C-terminal 339 776 437 0,1692
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-338
C-terminal
339-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage CX5-1
[NCBI] 		2652427 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFP93635.1 [NCBI]
Genbank nucleotide accession
MN270888 [NCBI]
CDS location
range 15565 -> 17895
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTGTCTCAGCAGGTTCCGCGTGAACGTCTGGACGGACAAGTCTCTGTTCAACTGAACCGTTTATCCGATGTGGTGAACGGGAACCGGCGTAGGCCGGGTGCTCGGTATTTGAGTACCCTACCAATCACAGCCAATTTCAATAACCGTGTGTTTGCTACGTACGTTGATGTGGCGGACGCTACCAACCATGTACTGGTGAACACAGAGGACGGGCAGCTGGTAGTTCTCTCAGAGGACTTTGGTACTGTACTGCATACCGGTACGTACCCGTATCTGCAAGCCAGTAATGCTAACGCTATCCAAACGGGTACACTTCGTGGTGACCTGTACTTAGCCAACACCCAGCAGGCTCCTACACTGGTGCACGGTACGACGACGCAACAGGACCCCACTAAGACCGGGTTCTTCTTTGTTCGAGTACCTGCATTCAGTAAAGACTACGACATTACATTATCAAACAGTACCGGCACGTACACGTACACCCACCGGACGCCTAATGGGCAGGGTGGTGGGGATGCTGACTTAGCAAAACCGTCGTACGTTGTCAGTCAACTAGTAAGCCTTATTAATGCAGAAACCGGTACACACGGCATTACGGCACACGCCTTTGATGCGTACATGTACTTGGTGAGCACTACCGCTACGTTATCAGCGACGACTAACGCAGGTTCCACTTACGCTACGGCAAGTAATCAGTCTCGGGTGGCGCTACTTTCTGACTTACCAGCACGGTTACCCACTATTGCGGATGGTACATTATGTGCGGTGGGTACAACACCACGGTCCTTTACGTGGTATGAGTACGAGTCAAGTACATCGGTCTGGAAAGAGGCTGGTGCCTACGGAAGCCCTACCGGCTTTTCAGGTATGCCTATCAAGTTGTCACTGGATGGAACGTACACCGTCAGCACGCCTGAGTATGAAGGACGTTTAGCTGGTTCGGATATTACGAATGAAGACCCCGGTTTTATTGAGCATGGTTTAACGGGTTTCGGTGTGTACCAAGGCCGATTGGTTATCTTGGCAGGACCCGAGGTTTGCATGAGTGCTTCCGGTAGGCCGGAGCGTTGGTATCGTAGTACGGTTACCTCTCTACTTACCGACGACCCTATCAACGTGTTCTCCGGTGCCGCGACCACTACCAACTTTAGCCACTGCGTGCAGTTTAACAAGGACTTACTGTTGTTCTCACGCTCTTGTCAGGCTGTGGTACCCAGCAGTAATGCTGCCATCACACCTGCAACCGCACAGATTGTTATTACCTCCCAGTACACCACTGATACGTTGGCAGCACCTACGGTTGTCGGTCGGTCGGTACTGTACCCTATGCCGCGCACAGAATCCTTTGCCGGTATTCTGGAGATGATTCCAAGCAACACTACGGACTCTCAGTACACATCCAACGACGTGACTGCCCACATCCCAAGGTACATGCCCGGTAGTATTCGGAGCATCACTGCCAGTACCACATCCAACTCCAGCGTACTGTTATGTACCGGAGATGACCGCAGCCTGTTCGTTCAGGATTATCTGTGGTCGGGCGATGAAAAGGTACAGTCGGCGTGGCACCAGTGGGGTGTACCGTACCCTATCGTGTGTGCGTGGTTCGTTCGTGACCGCGTGTGCTTGGGTATGCGTGACGGTACATCCATTGTAGTCGGTACAATAGAGCCGCAGGCAGGTACTACGTACTTATCGTACACCCGCCCGTTCTCAGACCTGTACTCACTGGTAACAGTCTCCGGTGGCCTGACTACTGTACCACAGCACCTGCGCGGCGCGTACCTATCCGGTGCAGAGCTGTTCCTAACCTTTGCTGATACCAGTAAGGGTGGTATGTGGGTGGGTATCGACTCCGTTGATACAGGTACGTGGCAGGTGCAGACAGTCAGGAACGTGCCTGATGGTCAGTACTTCCTAGGTGTTCGGTACATGAGCGTACTCACGCCGACACCGCCGCTAGTGCGGGATGCTAACGGTGTTGTTATTGGTACGAGCCGTACCCTGCTTGTGCGGTATGAGCTGACCCTGAAAGACTCGGGTGAGTTCCATGCTGTGGTGGCGGATAGTTCCCGTGTGCTAACAGATGGTACGTACTCCAGCTTGGTTTACTCTAATGTGGAGTTACTGCCGGACGAACCAACCAGCGCTACGCTGGGGCGTGTAGTTATCCCTGTACGCGCACAGGCTCAAGAGACGGTGGCTACGTTCGAAGCAGATTCCGATACCGACCTGTGTATCTTAGATATTGAATACGTCCTACAGTACAGAGCAAGGAGGAAGAGACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
39b14ad2996dc230b77c6da392c2ff7df28f6c2c0d4cf692680abd4904be68fe
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2897
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Six bacteriophages against potato bacterial diseases Zhang,X. and Kering,K. 2022-08-30 — GenBank