Protein

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Genbank accession
YP_010659925.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNEMFSQGGKGSTGILTNIQAIARACNVAEGKVILSTNTNTLLDDKTILFDRNAKKIWTLPTLPSGATIANVNGDQLTYNPGGITVSLLPAPNDIAVRVNEAITAVYDELASNTGSSKVGHITGRVGEVARTVQAALGDWVSLKDFGAVGDGITDDTAAIQAMVAWVNSRAKYSAPISVIFPAGHYKYTTGINFTRPVAVYGFQSATLDYSGTGAAMYLGDPTPEDAPTADNFYQSEYTIEGLRFTGGVQAGFGIFIKSFVFTPRIRYCIFMDYGNSATYDIYSQYENWDGIIECCEKHTYFSTVATGSFIALLGKKTDGSAYDGGNSRFTIRDCSMGAYDNQDLGYFAYINSTMCRVIGGNAHHCTGGILLGPNAHGAIIDGYYTEVSTAVRPWMVSVLSDKTNPANYLFPQSVRIRNCYINMHSEKIGNNGRIIGMMDGNVKLRDWVVEDIAVSTFANGQVLIDMNNLDEQVNNTFARINPVFIPYNSGAGAKFTVVNNPPLSPNAWTSSDVIEGTWTPSVGGNATYNIQKGKYRKEGRKVTVEFDIHINTIGTGNQSAILGLPFACGDTTGTGSVGYYAELALPVYGLYIRAEALNSNIMISASTASAVGISGSVAALGNNSRIIGTLVYFV
Physico‐chemical
properties
protein length:635 AA
molecular weight: 68086,83860 Da
isoelectric point:5,47436
aromaticity:0,10236
hydropathy:-0,02614

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 IPR012334
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 DC_2249 DC_2088
IPR011050
STR
133–512
IPR011050
IPR024535
ENZ
140–222
IPR024535
YP_010659925.1
1 635
Architecture
ATT
STR
RBD
ATT 1-261 | STR 262-532 | RBD 533-627 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010659925.1
1 635
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9875
Central domain 155 498 345 0,9887
C-terminal 499 635 136 0,9845
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-498
C-terminal
499-635

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage St11Ph5
[NCBI] 		2047765 Uroviricota > Caudoviricetes > Schitoviridae > Gamaleyavirus > Gamaleyavirus St11ph5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010659925.1 [NCBI]
Genbank nucleotide accession
NC_070873.1 [NCBI]
CDS location
range 61683 -> 63590
strand -
CDS
ATGAACGAGATGTTCTCTCAAGGTGGTAAAGGCTCTACGGGTATTCTTACCAATATACAAGCCATTGCTCGTGCATGTAACGTAGCAGAAGGTAAAGTTATTCTCAGTACGAATACTAATACATTGCTAGATGATAAGACTATACTCTTCGATCGTAATGCTAAGAAGATATGGACTTTACCTACTCTCCCCTCCGGGGCAACCATTGCTAATGTAAATGGTGACCAATTAACCTATAACCCAGGGGGTATTACCGTTAGTCTACTTCCTGCACCAAATGACATTGCTGTACGAGTCAATGAAGCCATTACAGCAGTATATGACGAACTGGCTTCTAACACTGGCTCTAGTAAGGTTGGTCACATTACCGGACGTGTTGGTGAAGTTGCTCGCACTGTACAGGCTGCATTAGGTGATTGGGTAAGTCTGAAGGACTTTGGTGCAGTAGGTGATGGGATTACCGATGACACTGCTGCTATTCAGGCTATGGTTGCTTGGGTAAACTCCCGAGCCAAATACTCTGCACCCATTTCTGTTATCTTTCCTGCTGGTCATTATAAGTATACTACTGGTATAAACTTTACACGCCCTGTAGCAGTATATGGTTTTCAGTCAGCTACTCTGGACTACTCAGGTACTGGTGCAGCAATGTACTTAGGTGACCCAACTCCAGAAGATGCACCTACTGCTGATAACTTCTATCAGTCTGAATACACTATAGAGGGTCTGCGATTCACTGGTGGTGTGCAAGCAGGTTTCGGTATTTTCATTAAGTCCTTCGTATTCACACCTAGAATCAGATACTGCATCTTTATGGACTATGGTAACTCTGCAACCTATGACATCTATTCTCAGTATGAGAACTGGGATGGGATCATTGAGTGTTGTGAGAAACATACCTACTTCAGTACAGTAGCAACTGGTAGTTTCATAGCTCTCCTTGGCAAGAAGACTGATGGTAGTGCCTATGATGGCGGTAACTCACGATTTACCATACGTGATTGCTCAATGGGTGCATACGATAACCAAGACTTAGGTTACTTTGCATATATCAACTCTACAATGTGCCGTGTAATTGGAGGTAACGCACACCACTGTACTGGAGGTATTCTTCTTGGGCCAAATGCTCACGGTGCTATTATTGATGGATACTACACAGAGGTGAGTACAGCTGTACGACCTTGGATGGTTTCAGTACTTAGTGACAAGACTAATCCTGCAAACTACCTTTTCCCACAGAGTGTACGAATCCGTAACTGTTACATCAACATGCATAGTGAGAAGATAGGGAATAATGGTCGCATCATCGGAATGATGGATGGTAACGTTAAGCTACGTGATTGGGTAGTAGAGGATATTGCTGTTAGTACATTTGCTAATGGACAGGTTCTGATTGATATGAACAACCTTGATGAACAGGTTAATAACACCTTTGCTCGTATTAATCCTGTATTCATCCCCTACAACTCAGGTGCTGGTGCTAAATTCACTGTTGTCAATAACCCACCATTATCACCAAATGCATGGACATCCTCTGATGTTATAGAAGGTACATGGACCCCTTCTGTAGGTGGTAATGCTACTTATAACATTCAGAAGGGTAAGTACCGTAAAGAAGGTCGTAAGGTAACAGTAGAGTTTGATATTCATATCAATACTATTGGTACAGGGAATCAGTCAGCAATTTTAGGTCTGCCTTTTGCGTGTGGTGATACCACAGGTACAGGTAGTGTAGGCTACTATGCTGAACTTGCCTTACCTGTTTATGGCTTGTATATCCGAGCAGAAGCACTGAACTCCAATATCATGATCTCTGCATCTACAGCCTCAGCAGTGGGTATTTCTGGTTCTGTTGCAGCACTGGGGAATAATTCACGTATCATAGGTACATTGGTTTACTTTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cbd71e2170a8c26afa94b02a9c3dc21b2583c8c2764302e22c1c0e71dafcf2a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
St11Ph5, a novel member of G7CVirus Podoviridae family Kulikov,E.E., Golomidova,A.K., Letarov,A.V., Babenko,V.V. and Kostryukova,E.S. 2018-01-11 — GenBank