Protein

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Genbank accession
AYD79899.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MVEKVDLSLIKTNADGEVYSGDGGLNVREVSDDTLSGNFDRLSGTLVLNIPNIGKVSIPGFTTPNDIGLGPIGPGGEDGRDGIDGLSGSDGGRGSDGCPGPRGNDGLPGRQGVRGSRGNIGPTGATGATGPSGKDGVVAVFIQAVDPSLEREIEPGSIWVRTSS
Physico‐chemical
properties
protein length:164 AA
molecular weight: 16428,82530 Da
isoelectric point:4,43943
aromaticity:0,03049
hydropathy:-0,35732

Domains

Domains [InterPro]
DC_0479
ATT
2–75
DC_0479 IPR008160
DC_0094
STR
54–159
DC_0094
AYD79899.1
1 164
Architecture
ATT
STR
ATT 2-75 | STR 76-159 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD79899.1 [NCBI]
Genbank nucleotide accession
MH389777.1 [NCBI]
CDS location
range 63644 -> 64138
strand -
CDS
ATGGTTGAAAAAGTTGATCTAAGTTTAATTAAAACTAACGCAGACGGTGAAGTTTATTCCGGCGATGGTGGATTAAATGTTCGCGAAGTTTCTGATGACACGTTAAGCGGAAACTTTGATCGTTTGAGCGGAACACTTGTTTTAAATATTCCGAACATCGGAAAAGTTTCGATTCCCGGATTCACAACTCCAAACGATATCGGATTGGGGCCAATTGGCCCTGGCGGTGAAGATGGTCGTGATGGTATCGACGGCTTATCCGGATCTGATGGCGGTCGTGGTTCTGATGGTTGTCCGGGGCCACGCGGTAACGATGGTTTACCGGGAAGACAAGGTGTTCGCGGATCTCGCGGAAATATTGGCCCAACTGGTGCGACTGGTGCGACTGGCCCAAGTGGAAAAGATGGCGTTGTTGCTGTATTTATTCAAGCAGTCGATCCATCACTTGAGCGCGAAATCGAACCCGGATCGATTTGGGTAAGAACATCTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
591bdd79afebed5dcf5ca31a5d49c14bc2b1707d715d789a63840d78236d144a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank