Protein

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Genbank accession

YP_007003341.1 [GenBank]

Protein name

tail spike protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MRLRLDVDAFGIDNTGGESTETTLGINRAFKYAVDEGFTELFIPKGTYLINGVNSAAVRPEDGGGIRAVSNLKVITHPESEFNVEANGSTGYSLLYVGPDVKNFEFEGGKFNGERYQHDYSSKPAKRETHEWGFGVHMKGAKDVTISKVKIKDFTGDGIIISAYGMLNVDYGPPYQPSERITVEKCVVDGCRRNNIAITAGEDVTIDRVHILNAGINADIDPAAGIDIEGYGEGDIDFEEPRNVKIHGCTFRGNRKDALCNFSGYNVIVTGNFSDGPISYGNGTDMVIGDNTFTRTDNTRTAIAGQKVSNGMTGNNVTIIGNTIKGFSSGIDARGADVNITGNTISELGPNGSGINVYQALNVNISNNNIQHSKGRHYKIQESTDVKIDGGSSLHSDVTGVDVVWSKLVKIKALDIKNSKQGVNIKESSVNVIDCEIDLSEYGTGVSYGVAFDKNSDVSIDGTRILNSRNLAIYGGTQAGKKVRIANNKILDCLGGGAISIVDSSPEEVTERAKPILFNNEVSYNRATGGGYAITLKGTKKADLIENTVYSTNGKKMSAAIKTDEASESRILNNTVTDGKIAPSGTDVLNENIEIL

Physico‐chemical properties

protein length:	596 AA
molecular weight:	63866,36120 Da
isoelectric point:	5,29298
aromaticity:	0,06711
hydropathy:	-0,35419

Domains

Domains [InterPro]

IPR012334
STR
4–229

IPR012334 IPR012334 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626

IPR011050
STR
22–347

IPR011050 IPR011050

IPR039448
ENZ
135–272

IPR039448 IPR039448

IPR006626
Unmapped
141–163

IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR012334

DC_0453
RBD
206–376

DC_0453

DC_0453
RBD
365–594

DC_0453

YP_007003341.1

1 596

Architecture

STR

STR 4-594 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	4	229	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	22	347	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR039448	ENZ	DC_0799	135	272	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	141	163	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	178	200	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	201	230	InterPro	Parallel beta-helix repeat	-	-	-	-
DC_0453	RBD	DC_0453	206	376	Novel HMM	DC_0453	C-terminal	Low	Positional only	102 proteins / 102 hits
IPR012334	STR	IPR012334	230	400	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	241	271	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	314	443	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	314	334	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	335	359	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	351	551	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	360	404	InterPro	Parallel beta-helix repeat	-	-	-	-
DC_0453	RBD	DC_0453	365	594	Novel HMM	DC_0453	C-terminal	Low	Positional only	102 proteins / 102 hits
IPR006626	Unmapped	-	406	427	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR012334	STR	IPR012334	410	585	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	455	475	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	480	503	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	517	538	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	566	590	InterPro	Parallel beta-helix repeat	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_007003341.1

1 596

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	18	18	0,9260
Central domain	19	585	568	0,9962
C-terminal	586	596	10	0,3683

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-18

Central
19-585

C-terminal
586-596

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Bacillus phage SP-10 [NCBI]	941058	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Bacillus subtilis [NCBI]	1423	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Genbank protein accession

YP_007003341.1 [NCBI]

Genbank nucleotide accession

NC_019487.1 [NCBI]

CDS location

range 31437 -> 33227
strand +

CDS

ATGAGACTAAGGTTAGACGTTGACGCATTCGGGATTGACAACACAGGAGGAGAGTCTACTGAAACGACGCTTGGGATCAATAGAGCGTTCAAGTATGCAGTTGATGAGGGGTTTACAGAACTGTTTATACCAAAAGGAACTTATCTAATAAATGGGGTCAACTCTGCGGCTGTGAGACCTGAAGACGGCGGAGGTATACGAGCAGTTTCAAACTTAAAAGTTATCACACACCCAGAATCAGAATTCAATGTTGAAGCGAATGGTTCTACAGGGTACTCATTACTCTATGTTGGTCCAGATGTTAAAAACTTCGAGTTTGAGGGTGGGAAGTTCAACGGAGAGCGTTATCAGCACGATTACAGTAGTAAACCTGCGAAAAGGGAAACCCACGAGTGGGGCTTTGGTGTTCACATGAAAGGAGCTAAGGACGTTACAATCAGCAAGGTAAAGATTAAAGACTTCACGGGCGACGGGATTATCATAAGCGCGTATGGAATGTTAAACGTAGACTATGGACCACCTTATCAACCTTCGGAAAGAATTACTGTCGAGAAATGCGTTGTAGATGGATGTAGACGTAATAATATTGCTATCACCGCAGGTGAGGACGTTACTATTGACCGTGTTCATATTTTAAACGCGGGAATTAACGCGGATATTGACCCTGCAGCAGGTATTGACATCGAAGGTTACGGAGAAGGTGATATTGACTTTGAAGAGCCTAGAAACGTTAAGATACACGGATGTACGTTTAGAGGGAACCGCAAAGACGCTCTATGTAATTTTAGTGGTTACAACGTAATTGTTACAGGTAACTTCAGCGATGGTCCAATTTCATATGGTAATGGTACAGATATGGTGATCGGAGATAACACGTTTACAAGAACAGACAACACAAGAACAGCAATCGCTGGACAGAAAGTTTCTAACGGGATGACTGGAAACAACGTTACGATTATTGGTAACACAATTAAAGGGTTTAGTTCCGGAATTGATGCGAGGGGCGCGGATGTGAATATAACAGGAAACACCATTTCTGAGCTTGGTCCAAACGGTTCAGGGATAAACGTATATCAAGCCTTAAACGTAAACATCAGCAACAACAATATTCAGCATAGTAAAGGACGCCACTATAAGATTCAGGAATCGACTGATGTTAAAATAGACGGCGGAAGTTCACTTCACTCTGACGTAACGGGTGTAGATGTCGTATGGTCGAAGCTCGTTAAAATAAAAGCGTTGGATATTAAAAACTCAAAACAAGGCGTAAACATAAAAGAGTCTTCCGTAAACGTTATTGACTGCGAGATTGACCTTTCTGAATATGGAACGGGAGTATCATACGGCGTTGCTTTTGATAAGAACAGTGATGTCTCGATTGATGGTACAAGAATCCTAAACTCACGTAATCTCGCGATATACGGCGGAACACAAGCTGGAAAGAAAGTTAGAATCGCGAATAACAAGATTCTTGACTGTCTTGGAGGAGGAGCTATTAGTATTGTAGACTCTAGTCCTGAAGAGGTCACGGAGAGAGCTAAACCAATATTGTTTAATAATGAAGTGTCGTATAACCGCGCTACTGGAGGAGGTTACGCAATAACTTTGAAAGGGACAAAGAAAGCTGACTTGATTGAAAACACCGTGTATTCAACTAACGGCAAAAAGATGTCCGCAGCGATCAAGACAGACGAAGCTTCTGAAAGTAGAATACTAAACAATACGGTAACTGATGGTAAGATCGCACCAAGCGGGACGGACGTATTGAACGAGAACATTGAGATTCTATAA

Genome Context

Tertiary structure

PDB ID

06c63aefdfe3ebc1d75d633f5f1203456f67c2b70245b12c7235fb39ed40d672

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,9046

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence