Protein

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Genbank accession
YP_009966408.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MARYTRTPVSTLQGINNELAKVELAMKDTLDRKGVTPNFMDANLDMNSRRVLNLPAPLTDQEPLRRGDLATGSNISFEYAQDTYLSIKEFLISKGLSGNYGFFEQGFSFVNEGDVGIDSDNKLWLLGTGSATVTAGTTPSSPDYERVSSYSFLTVAQLQEGSLQAGDTAILEDRGLATFEVVTGGTPNGLDVLDAGNGNTAVIKESVSNLDARWYGLSEDRGDNQLPIQAMIDDVGFFVLPPGVFDISDTIYYRGATKSLGSVWRGAGKETSTINCVGMGGKSAIAVDGDVFVRLELADFKITGFCDYAISLETATRETFQTKLSRLRLFSGNDTVRISRPFSVEVSHVDADSNNGHCFYTLGGNTVQFSNCYAHSVGVGKAGYRILGRALLVSCNGIDETTEDRYWGWFGDLATNKPYQITTINCNAEDFGSQGAILCENFGNLSIQGMSFLPRSTGTYDNIIHLKDSGNNRVYLDSVTSVSSKGATLSGESNLKAAGLTFGLSMSTSFTDYRDKSVSITYPLPYISTTADEFGVTALSINNLHAERDYSYETPVVKTWTANSPTYDGTKVKSVKTANTSATSITNCTGLREGTTLHLLIKDTFTTIRHSIGGEGRFVLKSGADELLSNGDVLTFVANGPSWVQM
Physico‐chemical
properties
protein length:646 AA
molecular weight: 69793,94650 Da
isoelectric point:4,88181
aromaticity:0,09288
hydropathy:-0,20433

Domains

Domains [InterPro]
DC_2003
STR
1–441
DC_2003
Coil
Unmapped
12–32
Coil IPR012334
DC_1714
RBD
400–646
DC_1714
YP_009966408.1
1 646
Architecture
STR
RBD
STR 1-547 | RBD 548-646
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009966408.1
1 646
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,9912
Central domain 226 541 317 0,9569
C-terminal 542 646 104 0,9766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-541
C-terminal
542-646

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage HP1
[NCBI] 		1357706 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009966408.1 [NCBI]
Genbank nucleotide accession
NC_048630 [NCBI]
CDS location
range 26973 -> 28913
strand -
CDS
ATGGCACGTTATACACGTACACCCGTTAGTACTCTACAAGGTATTAATAACGAACTAGCTAAGGTCGAATTAGCTATGAAGGACACCCTTGACCGTAAAGGGGTTACTCCTAACTTCATGGATGCTAATCTTGACATGAACTCACGTAGGGTTCTTAACCTACCTGCTCCTTTAACAGACCAAGAGCCTTTACGAAGAGGTGACTTAGCTACTGGTTCGAACATAAGTTTCGAATACGCTCAAGACACTTACTTAAGTATTAAAGAGTTCTTAATCTCTAAAGGCTTATCAGGTAACTATGGATTCTTCGAACAAGGCTTCAGCTTCGTTAACGAGGGAGACGTAGGTATTGATTCAGATAACAAGCTCTGGCTTCTAGGCACAGGCAGCGCTACTGTTACTGCTGGTACTACACCTAGCTCTCCTGACTACGAGCGTGTGTCCTCTTATTCATTCCTTACAGTAGCTCAGCTACAAGAGGGGAGTCTTCAGGCAGGAGACACAGCTATCCTAGAAGACCGTGGGCTTGCTACGTTCGAGGTTGTTACAGGGGGTACGCCTAACGGTCTTGATGTACTAGACGCAGGTAATGGGAATACTGCGGTTATAAAAGAAAGCGTATCTAATCTAGACGCTCGCTGGTACGGACTCTCGGAAGATAGGGGAGATAACCAGTTACCTATACAGGCGATGATTGATGATGTAGGATTCTTCGTATTACCTCCGGGTGTCTTTGATATCAGCGATACTATCTACTACCGAGGGGCAACAAAGAGCCTAGGGTCTGTATGGAGAGGAGCTGGTAAAGAGACTTCAACTATTAACTGCGTAGGCATGGGAGGTAAGAGTGCTATTGCGGTTGACGGGGATGTATTCGTCAGACTAGAACTAGCGGACTTCAAGATCACAGGGTTTTGCGACTACGCTATCTCATTAGAGACTGCAACACGAGAGACTTTCCAGACTAAGTTATCAAGGCTTCGGCTGTTCTCTGGTAACGACACTGTTCGTATATCGAGACCCTTCAGTGTTGAGGTATCTCATGTAGATGCGGATAGTAATAACGGTCACTGCTTCTACACACTAGGCGGTAACACAGTTCAGTTCAGTAACTGTTACGCTCACTCCGTTGGTGTAGGTAAGGCGGGTTATCGTATCTTAGGCAGAGCTTTACTAGTATCTTGTAACGGTATTGATGAGACTACAGAGGATAGGTACTGGGGTTGGTTCGGAGACTTAGCTACGAATAAGCCCTACCAGATAACGACTATTAACTGTAATGCAGAAGACTTCGGAAGTCAAGGCGCTATCTTATGTGAGAACTTCGGTAACTTAAGCATTCAAGGTATGTCTTTCTTACCTAGGTCTACTGGGACTTACGATAACATTATTCACCTTAAAGACTCAGGTAATAACCGGGTTTACTTAGACTCTGTTACTTCTGTAAGTAGTAAAGGTGCTACCCTATCGGGAGAGAGTAATCTTAAAGCCGCAGGTTTAACATTCGGATTAAGTATGTCAACTTCCTTTACTGACTACAGAGATAAGAGTGTAAGCATAACTTACCCGTTACCTTATATCTCTACTACAGCAGATGAGTTCGGGGTTACAGCTTTAAGCATAAATAACCTGCACGCGGAAAGGGATTATAGTTACGAGACTCCTGTAGTAAAAACATGGACAGCTAACTCCCCTACTTATGACGGTACTAAAGTTAAGTCAGTTAAGACGGCTAACACCTCAGCTACTAGCATAACTAATTGTACAGGACTTCGTGAGGGTACTACTCTTCATCTTCTAATAAAGGATACGTTCACTACTATACGTCACTCAATAGGAGGAGAAGGCAGGTTCGTATTAAAGAGTGGTGCGGACGAACTCCTGAGTAATGGGGATGTTTTAACGTTCGTTGCTAACGGACCATCTTGGGTTCAAATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ad90229bbb69027a02cf11b70dec19669e90622e4bf65c4f5dc05be1b15fce7c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7315
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudoalteromonas phage genomics Duhaime,M.B. and Sullivan,M.B. 2010-07-08 — GenBank