Protein

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Genbank accession
YP_007517847.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MYLGNQPALSYTSFAKQDFTTSATTSYTLDNPVTNANELALFINFVRQEPTTAYSASGTTLTLTSATSSSDDMYCVYLGKAVQTVNPPNASVGISQLSATGTKNSTTFLRGDNTFASAGGDNTPAFKATLSGNQTIADNATVKITFDTETFDTNNAFASNKFTVPSGEAGKYNIISQLTFYDGSDHIKKVVLAIYKNGSAITEAIYNLGGENMFRYALCNSNILNLSASDYIEIYGYADTSDGGTIAILSGNQQSYFSGYKLIGV
Physico‐chemical
properties
protein length:265 AA
molecular weight: 28219,76650 Da
isoelectric point:4,60176
aromaticity:0,11321
hydropathy:-0,15887

Domains

Domains [InterPro]
DC_0300
STR
59–265
DC_0300
IPR008983
RBD
123–264
IPR008983
IPR008983
RBD
123–263
IPR008983
YP_007517847.1
1 265
Architecture
STR
STR 59-265
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007517847.1
1 265
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9090
Central domain 116 254 140 0,0031
C-terminal 255 265 10 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-254
C-terminal
255-265

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC019P
[NCBI] 		1283079 Uroviricota > Caudoviricetes > Autographivirales > Pelagivirus HTVC019P >
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007517847.1 [NCBI]
Genbank nucleotide accession
NC_020483.1 [NCBI]
CDS location
range 32898 -> 33695
strand +
CDS
ATGTATTTAGGAAACCAACCAGCATTATCTTACACAAGTTTTGCTAAGCAAGACTTCACTACAAGTGCGACTACATCTTATACATTGGATAATCCAGTAACTAACGCAAATGAGTTAGCATTATTTATTAACTTTGTAAGACAAGAGCCTACTACTGCATACTCTGCAAGTGGTACTACATTAACATTAACAAGTGCTACATCTTCATCAGATGATATGTACTGTGTGTATTTAGGTAAAGCTGTTCAAACTGTTAATCCACCAAACGCATCTGTTGGAATATCACAGTTATCTGCTACTGGCACAAAAAATTCTACTACATTTTTAAGAGGTGATAACACATTTGCTAGTGCTGGTGGAGATAACACTCCAGCTTTCAAAGCAACTTTATCTGGTAACCAAACTATAGCTGATAATGCTACAGTTAAAATTACTTTTGATACAGAAACTTTTGACACAAATAATGCTTTTGCATCAAATAAATTTACTGTTCCAAGTGGTGAAGCTGGTAAGTATAATATAATTTCTCAATTAACTTTTTATGATGGAAGTGACCATATTAAAAAAGTTGTACTTGCTATATATAAAAATGGTTCTGCTATAACAGAAGCTATTTATAATTTAGGTGGAGAAAATATGTTTAGATATGCTTTATGTAATAGTAATATTTTAAATTTATCTGCTTCTGATTATATAGAAATTTACGGTTATGCAGATACATCAGATGGTGGAACAATAGCAATATTATCTGGTAATCAACAAAGTTATTTTAGTGGATACAAATTAATAGGAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4be7114e6ce7b37844c933fd97131c7a071719d1999aa3b03984f12aa2a70e4c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8734
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50