Protein

View in Explore
Genbank accession
XDF89733.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAVTGRKSGSSDQRNPVESPDSLHSKAEVRILLALGEGPWPDIPAADLPKRVLLDGTPIQNQDGTFNMEGIKLDFRPGTEDQTYIPGVPGVESETGIGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYATVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISLLSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDDRIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNANVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQTGGRVERDSTGRTIYLDRAISDVVAIGDTIIIRAVGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSGVETIEGRAGDVPAIASFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSLNADGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWIVGESSTDVSDISDAIFQDIQKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKSQIDEEVTSQITALQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGVIAANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDAGVRSYVNFLADQFAMLVNVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 126996,94370 Da
isoelectric point:4,83088
aromaticity:0,07719
hydropathy:-0,18825

Domains

Domains [InterPro]
DC_0014
STR
1–1166
DC_0014
IPR053171
Unmapped
3–857
IPR053171 G3DSA:1.20.5.340
IPR055385
ATT
91–218
IPR055385 IPR032876 IPR003961 IPR015406
IPR013783
STR
629–719
IPR013783
IPR036116
STR
642–708
IPR036116
XDF89733.1
1 1166
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-218 | STR 219-342 | ATT 343-503 | STR 504-1166
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDF89733.1
1 1166
Domain Start End Length (AA) Confidence
N-terminal 1 500 500 0,9459
Central domain 501 1109 610 0,0553
C-terminal 1110 1166 56 0,5581
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-500
Central
501-1109
C-terminal
1110-1166

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Sabo
[NCBI] 		3158141 Uroviricota > Caudoviricetes >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDF89733.1 [NCBI]
Genbank nucleotide accession
PQ008974.1 [NCBI]
CDS location
range 19922 -> 23422
strand -
CDS
ATGGCAGTAACGGGAAGAAAAAGCGGTTCATCAGATCAGCGTAATCCGGTTGAGTCGCCGGACAGTCTGCATTCAAAAGCGGAAGTGAGGATCCTGCTTGCGCTAGGTGAAGGGCCGTGGCCTGATATTCCCGCCGCAGACTTGCCGAAACGCGTATTGCTCGACGGCACGCCGATCCAGAATCAGGATGGCACGTTCAACATGGAAGGGATTAAGCTGGATTTTAGGCCAGGTACTGAAGACCAAACTTACATTCCTGGCGTTCCTGGCGTTGAATCTGAAACTGGTATCGGCGTAGAACTGAAATACGGCGAGGGAGCGGCGTGGGTACGTCAGATATCCAACACGCAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTACAGCAACTGGATAACGGTGACCGAGTCGGCGCGGTGGTTGATTACCGGATTGATCTGGCTGTCGGAGGCGGTTCGTATGCAACCGTTGTTAACGGCAAGTTTGAAGGTAAGACGACAACCCTTTACGAGCGCGACCATCGCATTGATTTACCTGCGTCAAGTACTGGCTGGCGCGTCAGAGTTGTGCGACTGACACCAGATTCAACCACTGACATGCTGGTTAGCCAGACACAAATTCAGGCTATCACGGAAATCGTTGATGTTAAGCTGACATATCCGCACACCGTCCTATTGTTCGCGTCATTCGATGCGAAACTATTCTCAAACATCCCTCCTATTTCTCTATTGTCAGAGGGGAGGGAGGTGCAGATACCGACGAATTACGATCCGGTTGCGAAGACATATTCAGGGACATGGAACGGCGAATTTAAACGTGCATGGACTGATAATCCAGCGTGGGTGATGTTCGACGCCGTGACGAATGAGCGGTTTAGTATTGGCGACAAGATCCCGGCGTTCCTCATGGATAAATGGCAACTATACCGGATTGCCCAGCGTTGCGACGACCGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATACGCGACCTTTGTGCGATATTTTGTGGCATGTCGTACTGGGGTAATCAGATGCTGAATTTTATCAGCGATTCCCCATCTGATGCCGTGCAAGTTCTGACAAACGCTAACGTGGTTAACGGCCAGTTCGTTTACAAGGGTGGTAGCGTCAAGAATCGACGTTCAGTTGGAATGGTCAGTTACGACGATCCGGTAAACCACTACCAATCAAATGTGGCCGTGGTTCCGGTGCAAGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGTTATCCGGTATTGGCTGCACTCGGTTGTCAGAAGCGCAGCGTAAGGCTCGTTACGGCGTGCTCACAAACGCGATGGATGAGCAGGTTTCTTTCGTGATCGGCATGGAAGGGATCGAGTTCATGCCGTGTGACGTGGTGGCGATTGCTGATGCTGAATTCAGCGGTGCGCAGACTGGCGGACGTGTTGAGCGTGATTCAACTGGACGAACAATTTATCTTGATCGGGCGATATCGGATGTTGTTGCCATTGGCGACACTATCATTATCCGCGCCGTAGGCCAGAAAGAGGCAGAGCGCCGGACTATCGCCGCCATTGCATCAGATCGCCGTAGCGTTACTGTTAGCGCAGACATTCCAACTGGTATCGCTGCATTCACGCCGTGGGTAATTGATTCGGCTAATCTGGCCGTACGGATGTTCCGCATCACGTCAGTAAAATGGAATGAAGCGGACAACACGTTTTCATGTTCCGGACTGATCTACAACGCGGACAAATATGATGCAGTGGATTCCGGCGCACGTCTTGATGATCGTCCTGTCTCTCTCATTCCATCAGCGATTGTGCCAGCGCCGACAAATCTTGCGATGGAACCGTATTACGTCATGAATCAGGGCGTGCGCACGGTGAGCATTTCATTTACATGGGATCGCGTTGACAAGGCGAGTCATTACGAAATGCAATGGCGGCGCGATAACAACGACTGGATTAACGTACCGCGCCAGACGACGATGATCTACGATTTGAACGGCGTATTTTCCGGTGATTATCAATTCCGCGTGCGGGCGATATCAAATGTGGGAGAAATATCATCCGGCTGGGCAACGTCCGGAGTTGAAACGATTGAAGGGCGTGCGGGTGATGTTCCGGCTATCGCATCATTCACAACCACTGCGCTGGTTTTCGGAGTGCGTCTTGATTGGTCATTCCCGAATGATGCAGAAGACACGAACAAAACAGAGATACGCTATTCACTGAACGCCGATGGCACCGATGCAATGCATCTTTCTGATGTTGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGACAGCGATTCTATTACAGCGCGAGGTTGGTAGACAGGCAAGGGAACATCGGACCGTGGACGGCTTGGATTGTCGGTGAATCCAGCACAGACGTATCTGATATTTCCGATGCTATATTCCAAGACATTCAGAAAACTGACGGCTGGAAAGACTTGATCGGCGGCATGGGCGACGCTGCGACAATTTCCGCTGATGCTATGCGTTCAACAATCGAAACCGCTAAAGCGCTACTGAAAAACACCTACGCTGACCTAGCAGAAACCCGCCGCTGGTTCGCGGAGAACGGCGCACGCAAGGCGGAAATCACCGAAACTCGACTCGTTATTGCTGACGAGGTTCAGGCGCTGGCGTTGCAGATGATAGAGCTGAAATCGCAGATCGACGAGGAAGTCACCAGCCAGATAACCGCCCTCCAACAAACGGTATCCACGCTTGCCGAAACGACCGCGCAGGATATCACTTCCCTTGAGTCTCGCATGGGGTCGGCTGAATCAGGCGTTAGCGCGAACGCTGGCGCGATTTCCGGCCTAACCACTACCGTGACCAATCAGGGCGGGGTAATCGCCGCTAACAGCCAGTCTATCGCGCAGATGACGGTAACAATCAACGGGTTTGAAACGTCGATAACCGACATCACCAACGTCACCAACGACATTAACGGCAATCTGAGCGCGTACCGGACGCTGCGAATTAAAGCGAACGTTAACGGCGTGGATTATGTCGCTGGGACGACAACGGGCATTCAGAACACGGATGCGGGCGTTAGGTCGTATGTTAACTTTTTGGCTGACCAGTTCGCGATGCTGGTGAACGTTAACGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTACGATCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATCGCAGACAGTATCCAATCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGACTTTGCCAATGGCACATTAGAGCTTAACGGCAATGAACCTGGGCAGGGACGAAAAACGATAGGTAACATTCGTGATGTGGTGTACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba79e020f51d9c45e1214c9ac3b6df81e7b6e4eeaa5ca3e21e811d87d7b4f5cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7832
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50