Protein

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Genbank accession
AAC00551.1 [GenBank]
Protein name
minor structural protein gp58
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,65
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSESKSASVVFTNGSLLAKNAQAAAGGAKSAADNAYNLAYSAQKTADGKNSIYRGSDPSTVPTANLKVGDLYFSDNAVYVWNGSSWEEAVSDTTGAEIHKKVEDAMAEKDKAIAELDANIKAKAKELDDEIKKTQGQTGFFIGAVPPSNPVKGTVWATTDQSGNMTSAKTWDGSSWVSTAFTQDLVAGNITASKIVGGTLDVNKITVANAQNIPITSTVSLGDKLSYIEQDADSLNAYVKGSKGSKTLEAILSMDPDHSSIAQVVNGQIAAAIGTYSDGSVRIDGKALYINSHAKIDDATIKSAMIDSLSADKITAGTLNADHVRVINLDANSITTGRLSGKNIELDGNTIVTGQLDLMKKDSNWVKQSSNYHNPWTWNNAHIYFNNYLQLLGENCDVTYTDNSHLNGGREFYSISTLTPGYLKFTTYQNKVSTTDKNFDGQITRTYIDSSRIETEDAWLGDLRIVGHHIRPADDKFVLVSNHAGTNFDSNGSVGFQLYGGVGLGQNTIYTASRDLYIQAGNAVQNLGQSYSTRSKTTIHCQNVISQVANKVSSRLSVKTDITPVSYDRALAAVMGTEMYDYRYTSDESGQHYVSGIIDDVNPDPQYHMDDMLINKERTARIDANLIGYHHVILQELIKKVDELEIKLKSLESKEK
Physico‐chemical
properties
protein length:656 AA
molecular weight: 71121,06970 Da
isoelectric point:5,43531
aromaticity:0,07470
hydropathy:-0,40488

Domains

Domains [InterPro]
DC_0308
STR
2–140
DC_0308 DC_0469
Coil
Unmapped
99–133
Coil IPR030392
Coil
Unmapped
634–654
Coil
AAC00551.1
1 656
Architecture
STR
RBD
STR 2-140 | RBD 205-656
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAC00551.1
1 656
Domain Start End Length (AA) Confidence
N-terminal 1 346 346 0,9916
Central domain 347 545 200 0,6702
C-terminal 546 656 110 0,8534
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-346
Central
347-545
C-terminal
546-656

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LL-H
[NCBI] 		12348 No lineage information
Host Lactobacillus delbrueckii subsp. lactis
[NCBI] 		29397 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAC00551.1 [NCBI]
Genbank nucleotide accession
EF455602 [NCBI]
CDS location
range 19311 -> 21281
strand +
CDS
ATGTCTGAAAGCAAATCGGCGTCAGTAGTCTTTACCAACGGATCATTGCTTGCCAAAAACGCCCAAGCAGCAGCAGGCGGCGCCAAAAGTGCAGCAGATAACGCTTATAATCTGGCCTACAGTGCTCAAAAAACGGCTGACGGCAAAAACAGTATCTACAGAGGGTCGGATCCAAGCACGGTGCCAACGGCCAACCTTAAAGTAGGCGATCTCTACTTTTCGGATAATGCTGTCTATGTCTGGAATGGTAGCTCTTGGGAAGAAGCCGTTAGTGACACTACTGGTGCTGAAATCCATAAAAAAGTAGAAGATGCCATGGCGGAGAAGGACAAGGCAATAGCAGAATTGGACGCCAACATCAAAGCCAAAGCTAAAGAACTGGATGATGAGATCAAGAAAACCCAAGGTCAAACTGGCTTCTTTATTGGTGCAGTTCCTCCGTCAAACCCCGTTAAAGGTACGGTCTGGGCAACCACCGACCAATCTGGCAACATGACCAGCGCTAAGACTTGGGACGGTTCGTCTTGGGTCAGCACGGCTTTCACACAGGATCTAGTTGCAGGGAACATCACGGCAAGTAAGATTGTCGGTGGCACTCTGGACGTCAACAAAATCACGGTTGCAAACGCACAAAATATCCCAATCACCTCAACCGTTAGCTTAGGCGACAAGCTTAGCTATATCGAGCAGGATGCCGATAGTCTTAACGCTTATGTTAAAGGCTCAAAAGGTTCAAAAACTTTAGAAGCTATCCTTTCGATGGACCCAGACCACTCATCTATAGCCCAAGTTGTTAACGGACAAATAGCAGCAGCTATTGGCACATACTCTGATGGTTCTGTCAGGATTGATGGTAAAGCTTTATATATCAACTCTCATGCTAAGATTGACGATGCGACCATCAAGTCAGCGATGATTGACAGCCTTAGCGCTGACAAGATCACTGCGGGGACGCTGAATGCGGATCACGTAAGAGTGATCAACCTTGATGCAAACAGCATCACGACAGGACGACTTAGTGGCAAAAATATCGAGCTGGACGGTAACACTATAGTCACTGGTCAGCTTGACTTAATGAAAAAAGATTCAAACTGGGTAAAACAAAGCTCTAACTACCACAACCCCTGGACATGGAATAATGCTCACATTTACTTCAATAATTATCTTCAATTACTTGGTGAAAATTGCGATGTTACGTATACTGACAATTCCCACTTAAATGGTGGAAGAGAATTCTATTCGATTAGTACCTTAACGCCAGGATACTTAAAATTCACCACCTATCAAAATAAGGTAAGTACAACAGATAAAAACTTTGATGGTCAAATTACAAGAACCTACATTGACTCTAGTAGAATTGAAACGGAAGATGCCTGGTTAGGCGATTTACGCATCGTAGGTCATCATATCAGACCAGCCGACGATAAATTTGTGCTGGTATCTAATCATGCAGGTACAAACTTTGATAGTAACGGCTCTGTTGGCTTCCAACTCTATGGTGGTGTCGGCTTGGGACAAAACACGATTTACACGGCATCTCGTGACCTTTATATTCAGGCGGGTAATGCCGTTCAGAATCTGGGACAATCTTACTCAACGCGGAGCAAGACTACCATCCACTGCCAAAACGTAATCTCTCAAGTCGCTAACAAGGTATCGTCTAGATTGTCCGTCAAGACCGATATCACACCAGTATCTTATGATCGGGCACTGGCTGCGGTTATGGGCACGGAGATGTACGACTATCGCTATACTAGTGATGAAAGTGGTCAACACTATGTGTCCGGCATCATCGACGACGTCAATCCGGATCCTCAGTACCACATGGACGACATGCTGATCAACAAAGAGCGGACGGCTCGTATTGACGCAAACTTGATTGGTTACCACCACGTGATCCTGCAAGAACTTATCAAAAAAGTAGACGAATTAGAAATTAAATTGAAGTCATTAGAATCAAAGGAGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8d8e99207de44a356d2139ddde020655dbe5b354c39a52187cec13a5ac2ff70
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6095
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genes and genome of Lactobacillus phage LL-H Mikkonen,M. 1996 — GenBank