Protein

View in Explore
Genbank accession
XLM52265.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETLKVNGSDYLVLDQPDKTVKSTVSNFLTNTGVVAAGSDTPRTLSDRFADVFNVKDFGAIGDGVTDDTQAIQVANDAATEVGTTLFFPKGVYRCTDGIDKTCEWVGSGAAKIGAFPLTDDKVFMIPGIKNKLPGTCLLFTGVGTKSFSTNREDEFSSVRYCVLNKGRKGQGLTPFGKDLAIVCDFNYKNTLDGEVTDPTNDNSADYDVGLLMHNTDLSGPSNVTVGGYFKVAGTMHFGQDPDGCTVYELRTMGNIGLAIVGDGTGTNSAFNMHGGAIFGNDHHSRNVESGVEKWGKHALYIDIPSSVGSGSRNGISFHGTWLATKLDVPVKYDRCGAIQFFGVVFENATQAGSQQAGGIKKQIGTSNTGDIGFFGCRFNSDQIRISGALLDTATESTVIVSGSNAGYGVEFWKGKVGGRFTGSKNQTNIQLTDDPTKTTSGVVLRRDSSGNFNILHNNDIKFTCDGGGIKTHLSSTVATVSGGQTNITRNLHKLSGGTQELNTLNGGVEGMRVVLVRNTSADTITLKNQTGNLRINGDFTLGAFDTIELIYIGGYWNEIGRVDRA
Physico‐chemical
properties
protein length:574 AA
molecular weight: 61037,33260 Da
isoelectric point:5,73292
aromaticity:0,08188
hydropathy:-0,24599

Domains

Domains [InterPro]
DC_2249
ATT
2–202
DC_2249 DC_1786
IPR011050
STR
58–484
IPR011050
IPR012334
STR
58–139
IPR012334
IPR024535
ENZ
61–111
IPR024535
XLM52265.1
1 574
Architecture
ATT
STR
RBD
ATT 2-202 | STR 203-484 | RBD 485-572 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM52265.1
1 574
Domain Start End Length (AA) Confidence
N-terminal 1 77 77 0,9821
Central domain 78 353 277 0,9123
C-terminal 354 574 220 0,7643
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-77
Central
78-353
C-terminal
354-574

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_Eco_J-01
[NCBI] 		3374113 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM52265.1 [NCBI]
Genbank nucleotide accession
PQ438393.1 [NCBI]
CDS location
range 47720 -> 49444
strand -
CDS
ATGTCAACTACAATTACTAATTTACCGGAAACATTAAAAGTTAATGGTTCTGATTACCTAGTTTTAGACCAACCTGATAAGACCGTTAAAAGCACAGTTTCCAACTTTCTTACTAACACTGGGGTGGTTGCTGCGGGGAGTGATACACCTAGAACATTATCCGATAGATTTGCTGATGTATTTAACGTTAAAGACTTTGGTGCAATTGGGGATGGAGTTACCGATGATACTCAAGCAATACAGGTAGCTAATGATGCAGCTACAGAAGTGGGTACTACTTTGTTCTTCCCTAAAGGGGTGTATCGTTGTACTGATGGTATCGACAAGACTTGTGAATGGGTAGGTTCAGGTGCTGCAAAAATAGGTGCTTTTCCTCTTACGGATGATAAAGTATTTATGATACCAGGAATCAAGAACAAACTACCTGGTACTTGCTTGTTATTCACTGGTGTAGGAACAAAATCTTTCTCTACAAATAGAGAAGACGAGTTCTCTAGTGTACGCTATTGTGTGTTAAATAAGGGAAGGAAAGGGCAAGGGTTAACACCTTTCGGTAAAGACCTAGCAATAGTGTGTGATTTTAACTATAAGAATACACTAGACGGAGAAGTTACAGATCCTACTAATGACAACTCTGCGGATTACGATGTAGGGTTGTTAATGCACAATACAGACCTATCTGGCCCATCTAATGTAACAGTCGGGGGGTATTTCAAGGTAGCAGGTACAATGCACTTTGGGCAAGACCCTGACGGGTGTACTGTATATGAATTAAGGACTATGGGAAACATTGGCCTAGCTATAGTAGGGGATGGCACTGGCACTAATAGTGCATTTAATATGCACGGTGGTGCTATCTTTGGAAACGACCATCACAGCCGTAACGTAGAGTCCGGTGTAGAGAAGTGGGGAAAACATGCACTATACATAGACATCCCATCTTCTGTAGGTTCTGGTTCACGTAATGGTATCTCCTTCCATGGAACATGGCTGGCAACTAAGTTAGATGTTCCAGTAAAATATGACAGATGCGGTGCTATCCAATTCTTTGGTGTGGTGTTTGAGAATGCAACACAAGCAGGTAGCCAACAAGCTGGAGGTATTAAAAAACAAATTGGAACCAGTAATACAGGTGATATAGGTTTCTTTGGGTGCAGATTTAATTCAGACCAGATACGTATTTCTGGTGCTTTATTGGATACTGCGACGGAATCGACAGTGATCGTTTCTGGAAGTAATGCTGGATATGGTGTTGAATTTTGGAAAGGAAAGGTTGGAGGGCGTTTTACAGGAAGCAAAAATCAAACAAATATTCAACTAACGGATGATCCAACAAAAACAACTAGTGGTGTGGTTCTACGTCGTGATTCTTCTGGTAATTTTAATATCTTACATAACAATGATATTAAATTTACATGCGACGGTGGGGGGATTAAGACCCACCTATCATCAACTGTAGCTACAGTTAGTGGTGGTCAGACTAATATAACTAGAAACTTGCACAAGCTAAGTGGTGGTACTCAAGAGTTAAACACATTGAACGGTGGAGTCGAAGGGATGCGTGTTGTTTTAGTAAGAAACACATCTGCCGACACAATTACACTAAAGAATCAAACAGGTAATTTACGCATCAATGGGGACTTTACTCTAGGAGCCTTCGACACTATAGAGCTAATTTACATAGGTGGTTATTGGAATGAAATAGGACGAGTTGACAGGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5c6bf64b495e6cbecb2cdef3a90c017e0817e273602d0e36a23eff565a895299
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7125
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of 4 new bacteriophages with antibiotic activity against multidrug-resistant Escherichia coli isolates recovered from cystic fibrosis patients Garcia-Gonzalez,G., Garcia-Perez,J.M., Rodea,G.E., Rivera-Rios,R. and Martinez-Flores,P.D. 2011-03-17 — GenBank