Protein

View in Explore
Genbank accession
QMP84403.1 [GenBank]
Protein name
carbohydrate binding domain-containing protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAFPEDVLNVKVEIKVDDAWTDITDYVYKDKISISRGAADETSDSSPTRCRLMINNIDGRFSPRNPNSPYYGKIGRNTPLLVSILDGDPFLDVPDGSRVWIDGFETPAEVDVRIDAQLFNWHREPGRVELASCFDATALEGWGLRYDNGALNVMAGRTGEWLNMVSDKTFTVPPSGRVTLRLVIDNTAQEFRFYQGPSVDGPWTAVGTRVFTGNPVVGATARLVFGDWFLGDDYANPVGRLHRFQLRDGENGDIIADLDMSQQAVGDTSLDDGAGNTWTVSNGGSVSNQYNRFRGEISSWPTKWVTGGFDAWEDITAESLLRRHAQGVIPLRSAIVRTTVTRPTLVGYWPMEDEEPSTVLAPMSPDTKNMLYTGDVTLRGHPGPSGSDDLPSFSAGSSWYADVNLNRFVNVGSWQVQGVFNFQQLTTTERAFFIIRTSGTIREWRILMDQDSVRVQGYTRDADGLTLNVNKAFAWTFDVGGAGTMTPGAAVNQWQKWQLAVAQVGGTIDWSIAGTLVGTGEGTIGNNDSSPLGTIGRVSAVLGPFYDADIDGISVGHVAVYYGDDISIFDAAEDGYTGDTALDRAARLAEEENENLVFVGDYADTVAMGAQRPDRLLDLMRETANTDRGIFGDSRDWDESAFRFIGRSALYNQPAVLELDYTADGEVHAPLDPTDDDQFLRNRVSAERERGGRAITEKSEGVNSIAEVGQYETTVTVNSESDDILPHIAGWDVHIGTWDEERYPTVHLKLHAAPHLIPDFLFVDQGTRIVIRNARDAAERTWIPPGDMVLMVRGYEETFGNFEWSADLQCVPARPWDIPLVAPDTGISAIAHDRVDTAGSLTAGASGTDDVFLPVWTSEGQLWTEDLRQYPFSVIAGGEEMRASAPGGLTNPNAFFDNDLTGWTTGSGATIERSTEVVHPDPQAVASLKLTPPGGVSALTARSDITVGVVPGTLYRFGMWVYSPAGWSDISINAQWTDSGTSIIQSDQVTHVIPAKTWTYIEDEFDAPASAVGVRVCPRINGTPSATDVFYCWAAHFARVVADWINDTFGRTSASGWGEADSGDDWVTVGGSATDYGVSSGYGQHLLSSVDVSRRSSITMPGTDFDLQVDVATSATATGASLFGGLMARYTDVDNLYHARLEFSTAGTMTVSVRKRVGGTETGLVPSASLGAYSAGTFYRMRFQGDGDALRIKVWAVADPEPTAWTVDVTDSDLSATGAGCRSIAVAGNSNASPVIRYDNFRVLNPQVLAVDRSRNRVVKSHVAGEDVRLTYPAHVAL
Physico‐chemical
properties
protein length:1278 AA
molecular weight: 138825,05670 Da
isoelectric point:4,54538
aromaticity:0,09546
hydropathy:-0,24742

Domains

Domains [InterPro]
DC_1085
STR
1–949
DC_1085 DC_0966
G3DSA:2.60.120.260
STR
890–1032
G3DSA:2.60.120.260
IPR008979
STR
893–1016
IPR008979
IPR003305
CBM
894–1015
IPR003305
DC_0912
STR
933–1032
DC_0912
QMP84403.1
1 1278
Architecture
STR
RBD
STR 1-1032 | RBD 1038-1278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QMP84403.1
1 1278
Domain Start End Length (AA) Confidence
N-terminal 1 382 382 0,4696
Central domain 383 581 200 0,3216
C-terminal 582 1278 696 0,5978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-382
Central
383-581
C-terminal
582-1278

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage Dagobah
[NCBI] 		2740180 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QMP84403.1 [NCBI]
Genbank nucleotide accession
MT711977 [NCBI]
CDS location
range 15306 -> 19142
strand +
CDS
ATGGCGTTCCCCGAGGACGTCCTGAACGTCAAGGTCGAGATCAAGGTCGACGACGCCTGGACCGACATCACGGACTACGTCTACAAGGACAAGATCTCGATCTCGCGCGGCGCGGCCGACGAGACCTCCGACTCGTCCCCGACGCGGTGCCGGCTGATGATCAACAACATCGACGGGCGGTTCTCGCCCCGGAACCCCAACTCCCCGTACTACGGGAAGATCGGCCGGAACACCCCGCTGCTCGTGTCCATCCTGGACGGCGACCCGTTCCTGGACGTGCCCGACGGCAGCCGGGTGTGGATCGACGGGTTCGAGACCCCCGCCGAGGTCGACGTCCGGATCGACGCTCAGCTCTTCAACTGGCACCGTGAGCCCGGCCGCGTCGAGCTGGCGTCCTGCTTCGACGCCACCGCGCTGGAAGGGTGGGGCCTGCGGTACGACAACGGCGCCCTGAACGTCATGGCCGGCCGCACCGGCGAGTGGCTGAACATGGTGTCCGACAAGACGTTCACCGTGCCGCCGTCCGGCCGGGTCACCCTGCGCCTCGTCATCGACAACACCGCGCAGGAGTTCCGCTTCTACCAGGGCCCGTCCGTGGACGGCCCGTGGACGGCCGTCGGCACCCGGGTCTTCACCGGCAACCCCGTCGTGGGCGCGACCGCGCGCCTCGTCTTCGGGGACTGGTTCCTGGGCGACGACTACGCCAACCCCGTCGGCCGGCTGCACCGGTTCCAGCTCCGCGACGGGGAGAACGGCGACATCATCGCCGACCTGGACATGTCGCAGCAGGCCGTCGGCGACACCTCGCTGGACGACGGGGCGGGCAACACCTGGACGGTGTCCAACGGCGGCAGCGTCAGCAACCAGTACAACCGGTTCCGGGGCGAGATCTCCTCGTGGCCGACGAAGTGGGTGACGGGCGGGTTCGACGCCTGGGAGGACATCACCGCCGAGTCGCTGCTGCGCCGGCACGCCCAGGGCGTGATCCCGCTGCGGTCGGCGATCGTGCGCACCACGGTGACCCGCCCCACGCTGGTCGGGTACTGGCCGATGGAGGACGAGGAGCCCTCCACGGTCCTCGCGCCGATGAGCCCGGACACCAAGAACATGCTGTACACCGGCGACGTCACGCTGCGCGGGCACCCGGGGCCGTCCGGCTCCGACGACCTGCCGTCGTTCAGCGCCGGGTCGTCCTGGTACGCCGACGTCAACCTGAACCGGTTCGTGAACGTCGGCTCCTGGCAGGTCCAGGGCGTCTTCAACTTCCAGCAGCTCACCACCACCGAGCGGGCGTTCTTCATCATCCGCACCAGCGGCACGATCCGCGAGTGGCGGATTCTGATGGACCAGGACAGCGTCCGCGTCCAGGGCTACACCCGCGACGCCGACGGGCTGACGCTGAACGTCAACAAGGCCTTCGCCTGGACGTTCGACGTCGGCGGGGCCGGCACGATGACGCCGGGCGCGGCCGTGAACCAGTGGCAAAAGTGGCAGCTCGCGGTGGCCCAGGTCGGCGGCACCATCGACTGGTCGATCGCGGGCACCCTCGTCGGCACCGGCGAGGGCACGATCGGCAACAACGACTCCAGCCCGCTCGGCACGATCGGCCGGGTGTCGGCCGTCCTGGGGCCGTTCTACGACGCGGACATCGACGGGATCTCCGTCGGGCATGTCGCGGTCTACTACGGGGACGACATCTCGATCTTCGATGCCGCCGAGGACGGGTACACCGGCGACACCGCCCTGGACCGGGCCGCGCGGCTGGCCGAGGAGGAGAACGAGAACCTGGTCTTCGTGGGCGACTACGCCGACACCGTCGCCATGGGCGCCCAGCGGCCGGACCGGCTGCTCGACCTGATGCGGGAGACCGCCAACACCGACCGGGGCATCTTCGGGGACTCCCGCGACTGGGACGAGTCGGCGTTCCGGTTCATCGGCCGGTCCGCGCTGTACAACCAGCCGGCCGTGCTGGAGCTGGACTACACCGCCGACGGCGAGGTGCACGCGCCGCTCGACCCGACCGACGACGACCAGTTCCTGCGCAACCGGGTGTCGGCGGAGCGGGAGCGCGGCGGCCGGGCCATCACGGAGAAGTCGGAGGGCGTCAACTCCATCGCCGAGGTGGGCCAGTACGAGACGACGGTCACCGTCAACAGCGAGTCCGACGACATCCTCCCGCACATCGCCGGGTGGGACGTACACATCGGCACCTGGGACGAGGAGCGGTACCCGACGGTGCACCTGAAGCTGCACGCGGCGCCGCACCTGATCCCCGACTTCCTGTTCGTCGACCAGGGCACCCGGATTGTGATCCGCAACGCCCGGGACGCCGCCGAGCGCACCTGGATTCCGCCGGGCGACATGGTCCTGATGGTGCGCGGCTACGAGGAGACCTTCGGGAACTTCGAGTGGAGTGCCGACCTTCAGTGCGTGCCGGCGCGGCCGTGGGACATCCCGCTGGTCGCCCCCGACACGGGCATCTCGGCGATCGCGCACGACCGGGTGGACACGGCCGGCTCGCTGACGGCCGGCGCCAGCGGCACCGACGACGTCTTCCTGCCGGTGTGGACGTCCGAGGGCCAGCTCTGGACGGAGGATCTGCGCCAGTACCCGTTCTCGGTCATCGCGGGCGGCGAGGAGATGCGCGCCTCCGCCCCGGGCGGGCTGACCAACCCGAACGCCTTCTTCGACAACGACCTGACGGGCTGGACGACGGGCTCCGGCGCCACCATCGAGCGCTCCACCGAGGTCGTGCACCCGGACCCGCAGGCGGTCGCCTCGCTGAAACTGACCCCGCCGGGCGGGGTGTCCGCGCTGACCGCCCGCAGCGACATCACGGTCGGCGTCGTGCCGGGCACCCTGTACCGGTTCGGGATGTGGGTGTACTCGCCGGCCGGCTGGTCGGACATCTCCATCAACGCCCAGTGGACGGACTCCGGCACGTCGATCATCCAGTCCGACCAGGTGACGCACGTGATCCCGGCGAAGACCTGGACGTACATCGAGGACGAGTTCGACGCGCCCGCGTCGGCCGTCGGCGTCCGGGTCTGCCCGCGCATCAACGGCACCCCGTCGGCGACGGACGTCTTCTACTGCTGGGCGGCGCACTTCGCCCGGGTGGTCGCCGACTGGATCAACGACACGTTCGGCCGGACGTCGGCGTCGGGCTGGGGCGAGGCCGACTCGGGCGACGACTGGGTGACGGTCGGCGGGTCGGCGACGGACTACGGCGTCAGCTCCGGGTACGGCCAGCACCTGCTCAGCTCGGTGGACGTGTCCCGCCGGTCGTCGATTACGATGCCGGGCACCGACTTCGACCTCCAGGTGGACGTGGCCACCTCGGCGACCGCGACCGGCGCGTCCTTGTTCGGCGGCCTGATGGCGCGGTACACCGACGTCGACAACCTCTACCACGCCCGGCTGGAATTCTCGACGGCCGGCACGATGACGGTCTCCGTCCGCAAGCGGGTGGGCGGCACGGAGACGGGCCTGGTGCCGTCGGCCAGCCTCGGTGCCTACTCGGCGGGCACCTTCTACCGGATGCGGTTCCAGGGTGACGGGGACGCGCTGCGGATCAAGGTGTGGGCGGTCGCCGACCCGGAGCCCACCGCGTGGACGGTCGACGTGACGGACTCGGACCTGTCGGCGACCGGCGCCGGCTGCCGCTCGATCGCCGTGGCCGGCAACAGCAACGCCAGCCCGGTGATCCGATACGACAACTTCCGGGTGCTGAACCCGCAGGTGCTGGCCGTGGACCGGTCCCGCAACCGGGTGGTGAAGTCCCACGTGGCCGGCGAGGACGTCCGGCTGACCTACCCGGCGCACGTCGCGCTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ef8f10d30a15636bd1069b8f1a2b0822fc3054a076a1f649e4a943a7912f8b9e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2732
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Streptomyces phage Genome sequencing and assembly Sharma,V., Hardy,A. and Frunzke,J. 2021-08-04 — GenBank