Protein

View in Explore
Genbank accession
AAR23167.1 [GenBank]
Protein name
gp16
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 0,54
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSILQKIVLGEPPSGSGGDNNRVAHIKTNENFGVVERSTPLDLRCLNDSTNLTPDDIGKRFGIWMAEPGKEVGFPLASSVPPNSCIHLFNVQGRVVIKFQAGDLSQLNVLNAGDWVKYVSDGVKNWHVAERGRMMWDEVVGGKLTVGGDLSAAVQSDEGHLVLGKMPGYFYGNSGSVGWWSLDAGGSYQYLLSDHTFRVNDEVVAVCDKGNALRFDWGKKTAGQLGATVDGKYLGYLWHSGNLAQPMTLDTPQYVGTKKTFTQAQEIATAPTGLHTQANLHLNGLGGLSCLGFSGQNNTVGVQLRVSSNTAVAELQCINYNATSFGVLSASNFNQASDRAFKSDIRTLEKVMARLRGKRGVTYLQKNNPEAGRQAGVIANEWWDFPELLGEGPEIDEDGDFIVRQYDESGKEIFGESGPPKGRPSLTFRYTNAVGVLLAGLLETDAALQDAVKRIAELEAAK
Physico‐chemical
properties
protein length:462 AA
molecular weight: 49946,52380 Da
isoelectric point:5,59338
aromaticity:0,08442
hydropathy:-0,28506

Domains

Domains [InterPro]
DC_0954
ATT
3–150
DC_0954 DC_0745 Coil
IPR030392
CHP
337–462
IPR030392
IPR030392
CHP
337–384
IPR030392 DC_0869
AAR23167.1
1 462
Architecture
ATT
STR
RBD
ATT 3-150 | STR 151-387 | RBD 388-462
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAR23167.1
1 462
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,8349
Central domain 138 336 200 0,1800
C-terminal 337 462 125 0,9989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-336
C-terminal
337-462

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage phi1026b
[NCBI] 		2881399 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAR23167.1 [NCBI]
Genbank nucleotide accession
AY453853 [NCBI]
CDS location
range 12954 -> 14342
strand +
CDS
ATGTCGATACTTCAAAAAATCGTCTTGGGCGAGCCACCCAGCGGAAGTGGCGGCGACAACAACCGCGTCGCGCACATCAAGACGAACGAGAATTTCGGTGTAGTCGAACGTTCGACTCCGCTCGATCTCAGGTGTCTCAACGATAGTACGAACCTGACGCCGGACGATATCGGAAAGCGGTTCGGGATTTGGATGGCCGAGCCGGGAAAGGAAGTCGGGTTTCCGCTCGCGTCGTCCGTGCCGCCAAATTCCTGTATTCACTTGTTCAACGTTCAGGGAAGGGTCGTGATCAAGTTTCAAGCCGGCGACCTGTCTCAACTGAACGTGCTGAATGCCGGCGACTGGGTGAAGTACGTGTCGGACGGTGTGAAGAACTGGCACGTCGCCGAGCGCGGTCGAATGATGTGGGACGAGGTTGTCGGCGGCAAGCTGACGGTGGGCGGCGATCTGTCTGCGGCGGTTCAAAGCGACGAAGGCCACCTTGTGCTTGGCAAGATGCCCGGCTATTTCTACGGAAATAGCGGGTCGGTGGGGTGGTGGTCTTTAGACGCCGGAGGATCGTACCAATACCTACTCAGCGACCATACGTTTCGCGTCAACGACGAGGTAGTCGCAGTGTGCGACAAGGGGAACGCTCTTCGATTCGACTGGGGGAAGAAGACGGCTGGCCAGCTCGGGGCGACGGTCGACGGAAAATACCTCGGCTATCTCTGGCACAGCGGTAACCTTGCACAACCGATGACGCTTGACACACCGCAGTACGTCGGGACGAAGAAGACGTTTACGCAGGCGCAGGAAATCGCAACGGCCCCTACGGGGCTACACACCCAAGCGAACTTGCATCTGAATGGGTTGGGCGGGTTGAGCTGCCTCGGGTTCTCGGGGCAGAACAATACCGTCGGCGTGCAACTCAGGGTTTCGAGTAATACGGCGGTTGCCGAATTGCAGTGCATCAACTACAACGCGACTTCGTTTGGCGTGTTGTCTGCGTCGAATTTTAACCAGGCGTCGGATCGCGCTTTCAAGTCCGACATCAGGACGCTCGAAAAAGTGATGGCGCGGCTGCGCGGTAAGCGGGGCGTGACGTATCTGCAAAAAAACAATCCGGAAGCGGGGCGGCAGGCTGGCGTCATCGCGAACGAGTGGTGGGATTTCCCGGAACTGCTCGGCGAGGGGCCGGAGATCGATGAGGACGGCGATTTCATCGTGCGTCAGTACGACGAGAGCGGCAAGGAGATTTTCGGCGAGAGCGGCCCCCCAAAGGGGCGGCCGTCGCTGACCTTCCGGTACACGAATGCCGTCGGTGTGCTGTTGGCCGGGTTGCTTGAGACGGATGCGGCGTTACAGGACGCGGTCAAGCGGATTGCCGAATTGGAGGCAGCGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7331857532d575b474187493e31607d9f8b17d14c24fa524ed49eccf72e0eec2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7419
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity of Burkholderia pseudomallei clinical isolates: subtractive hybridization reveals a Burkholderia mallei-specific prophage in B. pseudomallei 1026b DeShazer,D. 2004 15175308 GenBank