Protein

View in Explore
Genbank accession
QBP32944.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAYSWSEQVVPSGTTLISVDIEYLDKSYIYLYINNVLISNSDYSWNSDTLIQLNTPMASAGTVLLVRRTDKEYLYIMFAEGAAFIRENLDVQNTQFLHLAQELVEGRSIDGFYGDLSMNGYRITHLADGVDPKDAVNKGQLDSVSNRVSSIENSFLGLTTVSYPWYTVVSADTDTFEPPFKFTKAALYIDGLCQVPDYSYVVVDNKLLLAESVPTGTVVFARLGEDTDAATEAATTTALAAVQADLQNQINALRALLQGG
Physico‐chemical
properties
protein length:260 AA
molecular weight: 28578,67610 Da
isoelectric point:4,26249
aromaticity:0,10385
hydropathy:0,00808

Domains

Domains [InterPro]
DC_1609
STR
1–256
DC_1609
IPR005604
ATT
12–105
IPR005604 IPR008635
G3DSA:6.10.250.2040
STR
123–178
G3DSA:6.10.250.2040
QBP32944.1
1 260
Architecture
STR
ATT
STR
STR 1-11 | ATT 12-105 | STR 106-256 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Buco
[NCBI] 		2530183 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Bucovirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBP32944.1 [NCBI]
Genbank nucleotide accession
MK562503.1 [NCBI]
CDS location
range 35928 -> 36710
strand +
CDS
ATGGCTTACTCTTGGAGCGAGCAGGTGGTGCCTTCGGGCACTACCTTAATCTCGGTAGACATTGAGTACCTCGACAAGAGCTACATCTACCTGTACATCAATAATGTGCTTATCTCGAACTCAGACTACTCGTGGAATAGCGACACCTTAATCCAGCTGAATACGCCAATGGCGAGTGCCGGTACAGTGCTTCTGGTCCGAAGGACTGATAAAGAGTATCTGTATATTATGTTTGCAGAGGGTGCTGCTTTCATTAGGGAGAACCTGGATGTTCAAAACACCCAGTTTCTGCACCTGGCTCAGGAACTAGTAGAAGGGCGGTCTATCGACGGCTTCTACGGCGACTTGAGTATGAACGGGTATCGGATTACGCACCTGGCAGACGGGGTGGACCCGAAGGATGCTGTGAACAAAGGGCAGCTCGATAGCGTTTCTAATCGGGTATCTTCCATTGAGAACTCTTTCCTGGGTTTGACCACCGTCAGCTACCCGTGGTACACCGTGGTAAGTGCGGACACGGATACGTTCGAACCTCCATTTAAGTTCACTAAAGCTGCTTTGTACATTGACGGGCTATGCCAGGTTCCCGATTACAGTTATGTGGTAGTCGACAACAAGCTCTTGCTGGCAGAGTCTGTGCCTACGGGGACAGTAGTCTTTGCTCGTCTCGGGGAGGATACCGACGCCGCTACTGAGGCAGCAACTACCACCGCGCTGGCAGCGGTCCAGGCGGACTTACAGAATCAAATCAACGCACTGCGCGCGCTGCTTCAAGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
A cornucopia of Shigella phages from the Cornhusker state Doore,S.M., Schrad,J.R., Perrett,H.R., Dover,J.A., Schrad,K.P., Dean,W.F. and Parent,K.N. — — GenBank