Protein

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Genbank accession
YP_008853740.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MNLIPEDGSVTLISGGQAIEPNKLISFSIKNLFDNTKVTANKKANGSTGEIETKSGWYVSSMIPVKVGQTYSKNKPAEIVCYNNNSQYVTSYGNSTDSIKIPNNVAYIRLNILFENYIDFQLEANTVSTSYEKFGVFSNDIRVSSTNFENDSIVGEKLSDGSIDKTKTDFIQESNNLFNLENIEYDILLGLDGSMNSSINYVTSDYIQVDEGETYVTNEKYFGYIIYDKNKHLITGRGQDITGVNVPSGGYYIRLSILNKWLPNFKFYNQKHNAVGSYSIDFKNKPTITETFNEKNRFNKGSYDKNIKERDFEVVEIFKNASDFKAPTGRLIDSFERTYKDNVKSFRMNTLGNTTSEMQIVPVNNIPLKGIQEFNLIVYIEDVSKLTQVQLIANKEGGGSWTRTVKELKNGWNFLRYYSQEGDLSNWTNAILFRIVVYGITGQPTELTICDLKAIRPDKGKIIMVNDHGYSNYKNIAHTKLKALGVPTTFALNPGRLGVPIPGASSILSQEEIDELAVDPYAEFSYHAWDPTQKASKDMTAEELKIEMAKCTHYLKKNALYPDYFWRAAFVQNLAPNHDALNEHMESYACYDESSQFDAFPFKSSYGINRKQIHNIPNASVDTFFDILEKTHCLVVFYTHDISDDGGIHMTNAELDYFVNHVKNGIDNNWLEGTTYARLRHRYKPDYGKKGEFDFYENI
Physico‐chemical
properties
protein length:699 AA
molecular weight: 79499,11330 Da
isoelectric point:5,59576
aromaticity:0,12160
hydropathy:-0,49671

Domains

Domains [InterPro]
DC_1068
STR
6–156
DC_1068 G3DSA:3.20.20.370
DC_1068
STR
137–493
DC_1068
IPR011330
RBD
458–663
IPR011330
G3DSA:3.20.20.370
RBD
460–622
G3DSA:3.20.20.370
YP_008853740.1
1 699
Architecture
STR
RBD
STR 6-493 | RBD 494-663 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008853740.1
1 699
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,5790
Central domain 201 399 200 0,3071
C-terminal 400 699 299 0,6825
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-399
C-terminal
400-699

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiRS7
[NCBI] 		1403390 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008853740.1 [NCBI]
Genbank nucleotide accession
NC_022914.1 [NCBI]
CDS location
range 15187 -> 17286
strand +
CDS
GTGAATTTGATTCCAGAAGATGGTTCAGTGACACTAATAAGTGGCGGACAAGCAATAGAACCTAATAAACTAATTTCTTTTTCAATCAAAAACTTATTCGATAACACTAAAGTGACAGCAAATAAAAAAGCTAATGGTTCCACAGGAGAAATAGAAACAAAAAGTGGTTGGTATGTAAGTTCGATGATTCCGGTTAAAGTAGGTCAAACATATTCTAAGAATAAACCGGCAGAGATAGTTTGCTACAACAATAATTCGCAATACGTTACTAGTTATGGAAATAGTACCGACAGCATTAAAATACCTAACAATGTAGCATATATAAGATTAAATATACTATTCGAAAATTATATAGATTTTCAATTGGAAGCAAACACAGTTTCTACTTCTTATGAAAAGTTTGGAGTTTTCTCTAACGATATACGAGTTAGTTCTACCAATTTTGAAAATGACAGTATTGTGGGAGAAAAATTATCGGACGGTTCTATCGATAAAACAAAAACGGACTTCATTCAAGAATCTAATAATCTATTTAATTTAGAAAATATAGAGTACGATATATTGTTAGGGTTGGATGGTTCAATGAATTCCAGCATTAATTATGTAACGAGTGATTATATCCAAGTTGATGAAGGTGAAACCTATGTTACTAATGAAAAGTATTTTGGTTATATAATTTATGATAAAAACAAACATTTGATTACCGGACGAGGTCAAGATATAACAGGTGTTAATGTACCAAGTGGCGGGTATTATATTCGATTAAGTATTTTGAATAAATGGTTACCAAATTTTAAATTCTACAATCAAAAACACAATGCTGTTGGTTCTTATAGTATAGATTTCAAAAATAAGCCGACAATAACGGAAACTTTTAATGAAAAGAATAGATTTAATAAGGGAAGTTACGATAAAAACATCAAAGAGCGTGATTTTGAAGTTGTAGAAATATTCAAAAATGCAAGTGATTTCAAAGCGCCGACTGGTCGATTGATTGATTCATTTGAACGAACGTACAAGGATAATGTCAAATCATTCCGTATGAATACATTAGGGAATACAACTTCGGAAATGCAAATAGTACCGGTTAATAATATACCTTTGAAAGGAATACAAGAATTTAATTTAATAGTTTATATAGAAGACGTATCAAAATTAACTCAAGTACAACTTATTGCGAATAAAGAAGGTGGGGGATCATGGACTAGAACTGTCAAAGAATTAAAAAACGGTTGGAACTTCCTAAGATACTATTCGCAAGAGGGGGATTTGAGCAATTGGACTAACGCTATTTTATTCAGAATTGTAGTTTACGGGATTACTGGACAACCTACTGAGTTGACAATATGCGATTTAAAAGCAATACGCCCAGATAAAGGTAAAATAATAATGGTCAATGACCACGGGTATAGTAATTACAAGAATATAGCACATACTAAATTAAAAGCTTTAGGTGTTCCAACAACATTCGCACTTAATCCCGGTAGATTAGGCGTACCAATTCCCGGCGCTTCTAGTATATTGTCACAAGAAGAAATCGATGAATTAGCGGTCGACCCTTATGCAGAGTTCAGTTATCATGCTTGGGACCCAACGCAAAAAGCATCTAAAGACATGACAGCTGAAGAATTGAAAATAGAAATGGCAAAATGTACACATTATCTTAAAAAGAATGCTCTGTATCCAGACTACTTCTGGCGTGCCGCTTTTGTTCAGAACTTAGCACCTAACCATGATGCTCTAAATGAACACATGGAATCTTATGCTTGTTATGATGAAAGCAGTCAATTCGATGCTTTTCCATTCAAATCCTCGTATGGTATTAATAGAAAACAAATACACAATATACCTAACGCAAGTGTTGATACATTCTTTGATATTTTAGAAAAAACACATTGTCTAGTTGTTTTTTATACTCACGATATATCAGATGATGGTGGTATTCATATGACAAATGCAGAGCTGGATTATTTTGTAAATCATGTAAAAAATGGTATTGATAACAATTGGTTAGAAGGCACAACCTACGCAAGATTAAGACACAGATATAAACCGGATTATGGTAAAAAAGGTGAGTTTGACTTTTACGAGAATATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f1f2925bec5cf9ac6f6a33d069f2483d60d4ef2791efcfed841464bacce79327
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7534
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of phiRS7, the first sequenced Staphylococcal phage from the marine environment McDole Somera,T.S., Seguritan,V., Hisakawa,N., Miranda,A., Manuel,E. and Segall,A. 2023-06-21 — GenBank