Protein

View in Explore
Genbank accession
YP_009287393.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPNIMKPTGINAIWSENGQKVDPGAVKVGLGWVTELPPXQTANFIEYKQDLFNAHVNQHGIPEWDSVTEYQGNLSYTQGSNGVIYKCLRTHSDKIPTDPLNITAGYWRVAFEDAGEAAKVQANLDRHVTNYNTLSGIGNVVIARQNLSVYSRAEGDARYAMLHGNGSNVFSVAPATQPTHAIPLSQLSTLVPPATETVAGVMAVATTIETEAGANDTKAVSPLKAAQVYLKRKDNLSNLSNVTAARANLGLSDTATMPSSTFLKAASNLADVPNKALARSNLGITSSATQPETYFLRSAQNLADVPNKAQARVNLGLTAMATTAPSAVVMKADNLAGLTNTAAARSNLGLGTASTRNVGDFLSSGANLADLTNIQAARNNLGLKGGATLDVWGLPANTTAMDFQSSQSDISRGWARLPNGLLLQWGTGPGLSDDTRTNIQLPVPARILNVQVTVMGTFNNSIGPGAFMTDMWSNTGFRVSCNWGNWSYPFNWFAITSTL
Physico‐chemical
properties
protein length:499 AA
molecular weight: 52871,75720 Da
isoelectric point:7,75275
aromaticity:0,07028
hydropathy:-0,16627

Domains

Domains [InterPro]
DC_0043
STR
1–307
DC_0043 DC_0362
G3DSA:2.60.40.3940
RBD
406–495
G3DSA:2.60.40.3940
IPR054075
RBD
416–495
IPR054075
YP_009287393.1
1 499
Architecture
STR
RBD
STR 1-307 | RBD 318-499
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_MAG1
[NCBI] 		1639815 Uroviricota > Caudoviricetes > Vandenendeviridae > Pakpunavirus > Pakpunavirus MAG1
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009287393.1 [NCBI]
Genbank nucleotide accession
NC_031073.1 [NCBI]
CDS location
range 45131 -> 46630
strand -
CDS
ATGCCAAACATTATGAAGCCTACGGGTATTAACGCTATCTGGTCTGAAAACGGCCAGAAGGTTGACCCGGGTGCTGTAAAAGTTGGGCTTGGATGGGTGACAGAACTACCTCCCTNCCAAACTGCCAACTTCATTGAATACAAGCAAGACTTGTTCAACGCACACGTTAACCAGCACGGTATCCCCGAATGGGATAGCGTCACAGAGTATCAGGGAAACCTGAGTTATACTCAAGGTTCTAACGGTGTGATCTACAAGTGCCTTAGAACCCATTCCGACAAGATTCCAACCGACCCTCTCAACATCACAGCAGGATACTGGCGGGTGGCGTTCGAGGATGCAGGGGAGGCGGCCAAGGTTCAAGCTAACCTTGATCGGCACGTGACAAACTACAACACCCTCTCTGGAATCGGAAACGTAGTTATTGCAAGACAGAACCTGAGCGTGTATAGTAGAGCGGAAGGCGACGCCCGTTATGCTATGCTGCACGGTAATGGATCGAACGTCTTTAGCGTAGCACCAGCTACTCAGCCTACACATGCCATCCCACTAAGCCAGCTATCTACTCTTGTCCCTCCTGCGACTGAGACTGTAGCCGGGGTTATGGCAGTTGCTACGACTATTGAGACAGAAGCCGGAGCCAACGATACCAAGGCTGTCAGTCCTCTGAAGGCTGCTCAAGTGTATCTGAAGCGGAAGGATAACCTGTCCAACCTGAGCAACGTCACAGCAGCTAGAGCTAACCTAGGGCTCTCTGATACGGCCACGATGCCATCTAGCACGTTCTTGAAGGCAGCCAGCAACCTAGCTGACGTCCCTAACAAGGCGCTAGCCAGATCGAACCTAGGCATCACCAGTAGCGCTACTCAGCCTGAGACCTACTTCCTTAGAAGTGCTCAGAATCTAGCAGATGTTCCTAACAAGGCTCAAGCTAGAGTGAATCTGGGGCTAACTGCTATGGCAACTACGGCTCCTTCCGCTGTTGTCATGAAAGCTGACAACCTAGCCGGGCTGACAAATACAGCCGCTGCCCGCTCTAACCTTGGACTAGGCACAGCCTCTACTCGAAACGTCGGAGACTTCCTCTCGTCTGGTGCTAACCTAGCAGACTTGACAAACATTCAAGCAGCTAGAAACAACCTAGGCCTTAAAGGCGGTGCCACTCTAGACGTGTGGGGCCTCCCTGCCAATACAACCGCCATGGACTTCCAGTCGAGCCAATCGGACATTTCCAGAGGCTGGGCTAGACTTCCTAACGGCCTACTGCTACAGTGGGGAACTGGACCGGGCCTGTCTGACGACACAAGGACGAATATTCAGCTTCCTGTTCCAGCAAGAATCTTGAACGTGCAGGTAACCGTAATGGGAACGTTCAACAACTCTATCGGCCCGGGCGCTTTCATGACTGACATGTGGAGCAACACAGGGTTCCGAGTTAGCTGTAACTGGGGTAACTGGTCTTATCCGTTCAACTGGTTCGCCATCACTTCCACCCTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f9e2904293896cacd53a22f15d78c08bf47c30120ab5944ac13160af37de7767
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7810
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of the newly isolated bacteriophage vB-PaeM_MAG1 which is able to infect clinical Pseudomonas aeruginosa isolates Kwiatek,M., Parasion,S., Miziak,L., Gryko,R. and Lobocka,M.B. 2014-07-04 — GenBank