Protein

View in Explore
Genbank accession
YP_010767146.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,76
Protein sequence
MNLTPNDMLKALASIGLDGIISAGLVSSAGVKPLRRNVAIYGDSRTANCSSGSLPNKITENYGYASWLGQYSEGRIFFEPAFNFGVGGNTSAQWAARVGDVIASPSDVVVCLISTNDRTADFTLAQTQQNIEGVVMKLKQAGKIVVFINETPRGGANALTAPRQAIHEQVRAWINSYLPKLGVRVVDVWDKMTDTAAVTVDGLHFNPVGANIVGQALAREIQDLFNSPVPLPRVTSAYDSATNPFGQINTNALLTGTTGTKGGSANTTGDVATGYTVAGSSWTGMTVVASKEAASVGEAQVFKFSGTPTTSGALYTFEQIISLPNAKLAANIKAVADIEFEMTGCLGVSLDFRFLDSGTFNSKCCDRYQDGFPMSPIKVDGVQETPTTAITAGCTEVKIRVAVYGSQNVPMTGTVKIKQLAAIAA
Physico‐chemical
properties
protein length:425 AA
molecular weight: 44690,12900 Da
isoelectric point:6,19502
aromaticity:0,07529
hydropathy:0,04729

Domains

Domains [InterPro]
DC_1569
STR
3–224
DC_1569
IPR051532
Unmapped
27–224
IPR051532
IPR036514
STR
31–223
IPR036514
SSF52266
STR
37–225
SSF52266
cd00229
ENZ
38–219
cd00229 DC_2015
IPR013830
ENZ
41–210
IPR013830
YP_010767146.1
1 425
Architecture
STR
RBD
STR 3-225 | RBD 226-416 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa397
[NCBI] 		1460367 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa397
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010767146.1 [NCBI]
Genbank nucleotide accession
NC_073683.1 [NCBI]
CDS location
range 29450 -> 30727
strand +
CDS
ATGAACCTTACTCCAAACGATATGCTGAAAGCTCTAGCCTCTATTGGCCTAGATGGTATTATCTCTGCTGGCCTTGTATCGAGTGCTGGCGTCAAGCCGCTGCGTCGTAACGTTGCCATCTATGGTGACAGTCGTACAGCAAACTGCTCTAGCGGCTCCCTCCCAAACAAGATCACAGAAAACTATGGCTACGCCTCTTGGCTCGGTCAATACTCTGAGGGTCGTATCTTCTTTGAACCAGCATTCAACTTTGGTGTAGGTGGAAACACTTCTGCTCAGTGGGCTGCTCGCGTTGGTGATGTAATCGCCTCTCCTTCTGATGTTGTTGTATGTCTTATCTCGACTAACGACCGCACTGCTGACTTCACACTTGCTCAAACTCAACAGAACATTGAAGGTGTTGTGATGAAGTTGAAACAGGCTGGTAAGATTGTTGTGTTCATCAACGAGACTCCACGCGGTGGTGCAAACGCCCTGACAGCTCCAAGACAAGCCATTCATGAACAAGTGAGAGCTTGGATCAACAGCTACCTTCCAAAGCTTGGTGTGCGTGTTGTGGACGTTTGGGACAAGATGACTGATACCGCTGCTGTCACTGTAGACGGTCTACACTTCAACCCAGTTGGTGCAAACATCGTCGGGCAAGCCCTTGCAAGAGAAATCCAAGACCTGTTCAACTCTCCAGTGCCCCTGCCTCGCGTTACAAGCGCGTATGACTCTGCTACCAACCCGTTTGGTCAGATCAACACGAACGCCCTTCTAACAGGCACCACAGGGACTAAGGGAGGCTCTGCAAACACAACAGGTGACGTAGCCACTGGTTACACCGTAGCTGGAAGCTCTTGGACTGGTATGACTGTTGTTGCTTCTAAGGAAGCCGCGTCTGTAGGTGAAGCTCAAGTGTTCAAGTTCAGTGGTACACCAACTACATCTGGCGCTCTGTACACATTCGAACAGATCATCAGCTTGCCTAACGCAAAGCTTGCAGCAAACATTAAAGCTGTTGCTGATATTGAATTCGAAATGACTGGATGCCTCGGCGTTAGTCTCGACTTCCGCTTCCTTGACTCTGGCACTTTCAACTCTAAGTGCTGCGACCGTTACCAAGATGGATTCCCAATGTCTCCAATCAAAGTTGATGGTGTTCAAGAAACTCCAACTACAGCAATCACTGCTGGATGTACAGAAGTTAAAATTCGTGTTGCTGTTTACGGCAGCCAAAACGTTCCAATGACTGGGACGGTAAAGATTAAACAACTCGCAGCTATTGCTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d591332cfc1734700f0d16141b952cfdcd0c1962067ac61695182194be7f3f9e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank