Protein

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Genbank accession
YP_009885839.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MTIKNFTFFSPNSTEFPVGSNNDAKLYMMLSGMDYTTFRRTDWSSPVNTALNVQYVNTSFIVAGRYFELINETVALKADSLNYIHINIDLTKTTAPVSLSCETADNSNTIDLNNASGVYKRVVDIITTNGLGVMNRVTPTQKTTVGDLTSNSLRTGDLEFTGNLKTPAKRILASGASLLLDGDVVNVSKNISDCANGWILHFTEFKSRMNGNTRNSLNQWFFIPKESVQLADVGHSFALANSTGGVVTKFAYLQGNRITGHGVNNNTSSKQFALQHVLEY
Physico‐chemical
properties
protein length:280 AA
molecular weight: 30737,19410 Da
isoelectric point:7,76679
aromaticity:0,09286
hydropathy:-0,18464

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–139
G3DSA:2.60.520.10
IPR048780
RBD
2–135
IPR048780
SSF141658
STR
2–139
SSF141658
DC_1167
STR
2–280
DC_1167
YP_009885839.1
1 280
Architecture
STR
STR 1-280
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009885839.1
1 280
Domain Start End Length (AA) Confidence
N-terminal 1 152 152 0,8589
Central domain 153 269 118 0,0230
C-terminal 270 280 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-152
Central
153-269
C-terminal
270-280

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC964
[NCBI] 		2675256 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009885839.1 [NCBI]
Genbank nucleotide accession
NC_049487 [NCBI]
CDS location
range 15439 -> 16281
strand +
CDS
ATGACAATTAAAAACTTTACATTCTTTAGTCCAAATAGTACAGAGTTTCCAGTAGGTTCAAATAATGACGCTAAACTCTACATGATGTTATCAGGAATGGACTACACAACGTTCAGGCGTACCGACTGGAGTTCTCCTGTTAATACAGCCTTAAACGTTCAATATGTTAATACTTCTTTCATTGTGGCTGGTCGTTACTTTGAATTGATTAATGAGACCGTAGCCCTTAAGGCTGACTCATTAAACTATATTCACATTAATATTGATTTGACGAAAACGACAGCACCGGTTAGCTTATCTTGCGAAACAGCAGATAACAGTAATACAATTGACTTGAACAATGCTTCTGGGGTTTATAAACGTGTCGTAGACATCATTACAACTAATGGTCTAGGAGTGATGAACCGTGTAACGCCTACTCAAAAAACAACTGTAGGAGATTTAACTTCTAACAGTCTTAGAACAGGCGATTTAGAATTTACTGGAAACTTAAAAACTCCAGCAAAAAGAATTCTTGCTTCTGGTGCTTCGTTGTTACTTGACGGAGACGTTGTCAATGTTTCTAAAAATATATCAGACTGCGCTAATGGTTGGATTCTTCACTTCACAGAGTTTAAATCACGTATGAACGGAAATACAAGAAACTCACTTAATCAGTGGTTCTTTATTCCTAAAGAATCAGTACAGTTAGCTGATGTAGGACATTCTTTCGCTCTTGCTAATTCTACTGGCGGTGTTGTAACTAAATTTGCATATTTGCAAGGTAATCGAATCACAGGTCATGGGGTAAACAATAACACATCTTCAAAACAATTCGCACTACAGCACGTATTGGAATATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8d460193d6152a83d2550a475e2980c31c6257fe7a58b87ef87ba2c0496b6962
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7459
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank