Protein

View in Explore
Genbank accession
YP_009788013.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MSQVVTNAGEALFAHKAQANEQLDIDTFIFAYVPGQDSQAPVDRSEGLPPTAQRVHTQPVQQVGRINSNTVVYSTVLNSLTGPFEFNWVGLYSSVNNTLVAISHVKSVNKTITELGNAGNTLNRNFAIEYSGISDITGITVAPETWQLDFSARLAGMDALTQNLAMDMNGRDWFIGDGFKVEPTANDDEFRVIAGVGYVHGMRVELEQDYVFSVQSYPQNVYVDVWFEGDADSAWKTVSRFELSTVEVSNYNDEMGLKHYKFNLALIEGSDVYTDLRVQGKISKEISDHVNKENSAHNAESINWNGLRTNSNEVGKAAIALKKKILTENDFNKTVETGLYLGFGDEAGINSSINAPKGSGNVRFSVFVHVDDGVIFQEATAGNQKRGLRYYRTAYVVSDKYEDALKNSNWNTIPTLDSPNTFIDEVDSTQSMINLEHYSDGKGLNSQTYGLDIHNNPGAKSAVVVHQYSDDTPAVWLDNTDDQPMVRINNTHNRVRNPDGPETSRGDFLELKTEGLTKLRLRHDFVFEANKVTPIFYGAFDGFAALQIQTPNGNLSDTLQIKRANTSNAGSAINVENSGGIGLRVNQTGAGLAAFVRSDQNTDVVQIEKNSNGEGDVLQIRNKGKGQSLRVEDSEGNTTFAVDNVGLINWKSDNQQNSVGESGSAAILPSAPETYLKIKAANGTVLLVPAYLQG
Physico‐chemical
properties
protein length:694 AA
molecular weight: 75960,99020 Da
isoelectric point:4,89369
aromaticity:0,08501
hydropathy:-0,41873

Domains

Domains [InterPro]
DC_1466
ATT
1–188
DC_1466
IPR022225
ATT
3–157
IPR022225
YP_009788013.1
1 694
Architecture
ATT
ATT 1-188 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009788013.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 416 416 0,9634
Central domain 417 615 200 0,3206
C-terminal 616 694 78 0,8928
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-416
Central
417-615
C-terminal
616-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage C5a
[NCBI] 		1916107 Uroviricota > Caudoviricetes > Peduoviridae > Catalunyavirus C5a >
Host Pseudoalteromonas sp. RHS-str. 402
[NCBI] 		1082812 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Pseudoalteromonadaceae > Pseudoalteromonas >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009788013.1 [NCBI]
Genbank nucleotide accession
NC_047790 [NCBI]
CDS location
range 31004 -> 33088
strand +
CDS
ATGTCACAAGTAGTTACTAACGCAGGCGAAGCCTTATTTGCACACAAAGCGCAGGCAAATGAGCAGTTAGATATTGATACGTTTATTTTTGCTTATGTTCCAGGACAAGATTCGCAAGCACCGGTAGACCGCAGCGAAGGTTTGCCGCCAACTGCACAGCGAGTGCATACTCAACCCGTTCAGCAAGTGGGCCGTATTAATAGCAATACGGTGGTTTACTCTACCGTATTAAACAGCCTAACAGGCCCGTTTGAATTTAACTGGGTTGGATTGTATTCATCTGTAAATAATACGCTGGTAGCTATTAGCCATGTAAAAAGCGTAAACAAAACAATTACAGAATTGGGCAATGCAGGTAATACGCTAAACCGTAACTTTGCCATTGAGTACTCAGGTATTAGCGATATAACCGGTATTACAGTCGCACCAGAAACATGGCAACTAGATTTTAGTGCCCGTTTAGCTGGCATGGATGCGTTAACCCAAAACTTAGCAATGGATATGAATGGCCGCGACTGGTTTATAGGTGATGGGTTTAAGGTAGAACCGACAGCTAACGATGATGAATTTAGAGTTATTGCGGGTGTAGGTTATGTACATGGAATGCGTGTAGAGCTTGAACAAGACTATGTATTTAGTGTGCAAAGCTACCCACAAAATGTATATGTCGATGTTTGGTTTGAAGGCGATGCAGATAGTGCTTGGAAAACAGTTAGTAGATTTGAATTATCAACTGTTGAAGTTAGTAATTACAATGATGAAATGGGTTTAAAGCACTATAAATTTAATCTTGCTTTAATAGAGGGAAGTGATGTTTATACAGATCTCCGTGTTCAAGGAAAAATAAGTAAAGAAATTTCAGACCATGTTAACAAAGAAAATAGCGCTCATAATGCTGAATCTATCAACTGGAATGGGTTAAGAACAAATAGTAATGAAGTAGGAAAAGCAGCTATAGCGCTTAAAAAGAAGATACTTACAGAAAATGATTTTAACAAAACAGTAGAAACTGGTTTGTATTTAGGTTTTGGTGATGAAGCAGGCATAAATAGTTCAATCAATGCACCAAAGGGAAGTGGTAACGTTAGATTTTCGGTTTTTGTACATGTAGATGATGGTGTAATCTTTCAAGAAGCAACTGCTGGGAATCAAAAGAGGGGTCTAAGATATTATCGAACCGCTTATGTTGTTTCGGATAAATACGAAGATGCTTTAAAAAATTCTAATTGGAATACTATACCGACATTAGACTCACCTAATACTTTTATTGACGAAGTAGATTCTACGCAATCAATGATTAACCTAGAGCATTATTCAGATGGAAAGGGCTTAAATTCACAAACGTATGGGTTAGATATACATAATAACCCCGGAGCTAAGTCTGCTGTTGTTGTACATCAATACAGTGATGATACCCCAGCGGTTTGGCTTGATAATACTGATGATCAGCCAATGGTTAGAATAAACAATACGCACAATAGAGTTAGGAATCCAGATGGCCCAGAAACATCTAGAGGCGATTTTTTAGAACTGAAAACTGAAGGTTTGACAAAACTTAGATTGCGTCACGACTTTGTATTTGAAGCTAATAAGGTTACACCTATTTTCTATGGTGCATTCGATGGATTTGCAGCGCTACAAATACAGACACCAAACGGCAATCTATCAGACACATTACAGATAAAAAGAGCTAATACTAGCAATGCTGGATCTGCCATAAATGTAGAAAACTCTGGCGGAATCGGCCTGCGCGTTAATCAAACAGGTGCTGGTTTAGCTGCATTTGTGAGAAGTGACCAAAACACTGATGTTGTCCAAATTGAGAAGAACTCAAATGGGGAAGGAGACGTTCTGCAAATTAGGAATAAAGGAAAAGGTCAGTCGTTAAGGGTCGAAGATTCAGAGGGAAACACTACATTTGCAGTTGATAATGTTGGATTAATAAATTGGAAAAGTGATAATCAGCAGAATTCTGTTGGTGAAAGCGGGAGCGCTGCCATCCTACCATCAGCTCCAGAAACTTATTTGAAAATTAAAGCAGCCAATGGAACAGTACTGTTAGTGCCGGCCTACTTACAAGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
230da7f91bef452add54d6ae178f0293d0a1e7f2b502ce294b66ea282b55e45e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7059
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An insight into ecological interactions, comparative genomics and biogeography of Pseudoalteromonas phages Lara,E., Vaque,D., Sa,E.L., Salazar,G., Sanchez,P., Duhaime,M.B., Ignacio-Espinoza,J., Santos,F., Roux,S., Anton,J., Sullivan,M.B. and Acinas,S.G. 2019-11-22 — GenBank