Protein

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Genbank accession
QIO00945.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGFFAGKFSDGKTVLSLTNNNGGDTNEHYSPGGNTIFHSDMPFVLVDGTYEAALGNAGNGYFVCAMPPDIINMKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQYLTFAEEPSRAFAAVGLSSAFAIGDSLASGTYIYNSSIGHEESIARQGTGGTLIQGSDFGIVRPGGFVPAGEAIAGAYDLLGFPKGSSTVPLDGGNAKYWDPNWYNPIGSAGRGHNHFYVCSSNIRSYIGKKREVPANTNVFYNPSNLVYACRGSASNMASQSVNTVYVQDWYNVTPTKVIWYVLNLRYSNGNISVSGTPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEFIGSNNGSLWSPINYGGAASQISIYKFNAGKQWYVDTNTNSIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPSYPGTGDYYLPLSTVWLGLPNAHSTIILTTEVIMGNINTAGQPIRTYAGSAWQVQGRRQQSYTAGDGVFHQILTLPPGHLVPYHGTSSYSYWQASSSNSNMVFRRNGYIYTVKNLGNGNVEFGVIIHAGSQAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:590 AA
molecular weight: 63430,78140 Da
isoelectric point:7,18748
aromaticity:0,12203
hydropathy:-0,19441

Domains

Domains [InterPro]
IPR059609
RBD
1–590
IPR059609
QIO00945.1
1 590
Architecture
RBD
RBD 1-590
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIO00945.1
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,3215
Central domain 11 244 235 0,8868
C-terminal 245 590 345 0,6574
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-244
C-terminal
245-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage smaug
[NCBI] 		2713322 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus smaug
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIO00945.1 [NCBI]
Genbank nucleotide accession
MT074461 [NCBI]
CDS location
range 10374 -> 12146
strand +
CDS
ATGGGTTTTTTCGCAGGAAAGTTTAGTGATGGTAAAACAGTGTTATCACTAACAAATAATAATGGTGGAGACACCAATGAGCATTACAGTCCTGGAGGTAACACAATATTTCACTCTGATATGCCCTTCGTTCTAGTAGATGGAACATATGAGGCTGCTCTAGGTAACGCTGGTAATGGATATTTTGTTTGTGCGATGCCTCCTGATATCATTAATATGAAGTCTAATGATCCTGGTAGAGTAATCCTTACTGCTATTGAGATTAATGGTACACATAGGGGGTTTCTCAATGGTACACAATCGCAGGTAGGTCAGTATCTTACTTTTGCAGAAGAGCCCTCACGAGCATTTGCTGCTGTAGGACTAAGTTCCGCCTTTGCTATTGGGGATAGTTTAGCTAGTGGTACTTATATATACAATAGTTCAATAGGTCATGAAGAATCTATAGCACGTCAAGGTACAGGGGGTACACTAATTCAGGGTTCTGATTTTGGTATAGTAAGGCCAGGTGGCTTTGTACCTGCAGGAGAAGCTATTGCGGGAGCTTATGACTTACTAGGCTTCCCTAAAGGGTCTAGTACTGTACCTTTGGATGGTGGAAATGCTAAATACTGGGATCCTAACTGGTATAACCCTATTGGGTCTGCCGGTAGGGGGCATAATCATTTTTATGTATGTAGCTCTAACATTCGTAGCTACATCGGAAAGAAAAGAGAAGTTCCTGCGAATACTAACGTATTCTACAATCCCAGTAATCTAGTTTACGCATGTAGAGGGTCCGCTAGTAACATGGCTAGTCAGTCTGTTAACACCGTTTATGTTCAGGACTGGTACAACGTTACGCCAACTAAGGTTATTTGGTATGTACTAAATCTACGTTACTCAAATGGTAATATAAGTGTTTCTGGAACCCCATTTACTGGCTCTGATATTCTTATATCTCCTTCAAACTTTACTATTAAAGGAGTTAGTCTCCCTAACACTGGATATAAGTTCATTAACCAGAATGCTTTTGGGAACTTGGGTTATCGTCCCGACATGGAGTATGTGGGTAATAATGCCGCGTATACTGGAGTTTTTGGCGATACAACCGCCAGATGTGAGTTCATTGGGTCTAATAATGGTAGTCTATGGTCCCCTATAAACTATGGTGGTGCTGCCTCCCAGATTAGTATCTACAAATTTAACGCAGGTAAGCAGTGGTACGTGGATACTAATACTAACTCTATTGGTAATGAACATGGAGCTGTGTGGAGTCCAAGTACAGTTCCTCTCCGATTATTTCCAAATAACGTGGCTAGTACATATGTTGGAGATGATATTACTCCTTCATACCCAGGTACTGGGGATTACTATCTTCCTCTATCAACTGTTTGGTTAGGGTTACCTAACGCCCATTCTACTATCATCCTAACTACTGAAGTTATCATGGGTAATATTAATACCGCCGGACAACCAATTCGTACGTATGCAGGTAGTGCGTGGCAGGTACAGGGTAGACGTCAGCAGAGTTATACTGCAGGTGACGGAGTATTTCACCAAATATTGACTTTACCCCCTGGGCACCTAGTACCTTATCATGGGACTTCTTCTTATAGCTATTGGCAAGCATCATCTTCTAATTCAAACATGGTGTTTCGTAGGAATGGATATATCTACACAGTAAAGAACCTTGGTAATGGTAACGTTGAGTTTGGTGTTATTATACATGCTGGATCTCAGGCAGCTGTTTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7d1ad86abed97c5ba5a5b6574b98556217947ddbb558ad1599a3cfec0232a93
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2501
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank