Protein

View in Explore
Genbank accession
ASV43618.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSKHESTFMSRFLKYCIDNRLGLVYNGTNRRIIQMTLYIGRKNSGEPLLHLTNTARTEAEMKTGNTFSDTLFHSGMPFLTVIDIITITEFNDAGVYPGRSPYRAGTPKVTDPATVAKLDYYFNNGYLFDARAISIAPAGVDVQGLGTFGSSTSYNRLFSSPVLNGEYKNIRVSAGISNRSAASGTPPSFDNSISAIQIASSSSNLVTLSGGLARVGDLGLRFANTSNYISNSGSASGSPSLVTNWRNITTRMLYTTGASAVGPFSYPNNGSNTALRFKVQIYIFNLKKTSNGNDYEFGRAYGNNAAIRISGQEITVGDKSIKDLSFAYTSGSYSTSTGGGRRYDEAGVLGQSLLLEHYNRSCHDWWYNIYPAANMNLRITPGGNITTTAYIEITHMALRATYKYPTLKVGDPISFEMTANEIKMRDESNNSISIAKVGSGRRLKKSYPQFKVTLPGQTNLTPPTMRAGASVYTQPTSSVVIVGLTTYTKTEVISETPIPDEFFNRVKTCHISGGLINGTLSMSSYGMNKTIGLSNIRVTTSQINADTSLPVGQLASYNFYIEQNMSYYDFYYIQATYSNGNKGSVQINYNAEVIGNTYRITRVTRSTLSSSHIRGSVITDFNITRYYDEVQSGVADNQLVINYPEVRFNLLLLGVEDK
Physico‐chemical
properties
protein length:658 AA
molecular weight: 72166,14390 Da
isoelectric point:9,30564
aromaticity:0,10486
hydropathy:-0,27842

Domains

Domains [InterPro]
IPR059609
RBD
35–88
IPR059609
DC_2140
STR
87–658
DC_2140
ASV43618.1
1 658
Architecture
RBD
STR
RBD 35-86 | STR 87-658
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASV43618.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 24 24 0,0951
Central domain 25 223 200 0,7945
C-terminal 224 658 434 0,5221
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-24
Central
25-223
C-terminal
224-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF12
[NCBI] 		1983595 Uroviricota > Caudoviricetes > Demerecviridae > Jesfedecavirus > Jesfedecavirus JSF12
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASV43618.1 [NCBI]
Genbank nucleotide accession
KY883655 [NCBI]
CDS location
range 58546 -> 60522
strand -
CDS
ATGTCAAAGCATGAATCTACATTCATGTCGAGATTTTTAAAATACTGTATTGATAATCGCCTAGGGCTAGTGTATAATGGAACTAATCGGAGGATTATTCAAATGACTTTATACATTGGAAGAAAAAATAGTGGTGAACCACTATTGCACCTTACAAACACTGCTAGGACAGAAGCTGAGATGAAGACAGGGAACACGTTCTCTGACACTCTTTTTCACTCTGGCATGCCATTTCTTACTGTAATTGATATAATTACTATTACAGAATTCAATGATGCAGGAGTATACCCTGGGCGGAGCCCTTATAGGGCAGGAACCCCTAAAGTAACAGACCCAGCTACTGTAGCAAAATTAGACTACTATTTTAACAACGGTTATTTATTTGATGCTAGGGCTATAAGCATAGCCCCTGCGGGGGTGGATGTGCAAGGGTTAGGTACGTTTGGTTCTAGCACCTCGTATAATAGGCTATTCTCTAGCCCTGTACTAAATGGTGAGTACAAAAATATCAGAGTTAGTGCGGGAATCTCTAACAGGTCTGCTGCCTCAGGAACTCCGCCATCTTTTGATAACTCTATTAGCGCTATACAGATAGCGTCTTCCTCAAGTAACCTAGTCACTCTATCTGGGGGTTTAGCTAGGGTAGGGGATTTAGGTTTAAGGTTTGCTAACACCTCAAACTATATCAGTAATAGTGGCTCAGCTAGCGGGAGTCCGTCGCTGGTAACAAACTGGAGAAATATCACAACTAGGATGCTCTATACTACGGGTGCATCGGCTGTAGGTCCATTCAGCTACCCCAATAACGGCAGCAACACTGCACTGCGTTTCAAGGTTCAAATATATATCTTCAATCTCAAGAAAACTTCCAACGGCAATGACTATGAGTTTGGTAGGGCATACGGAAATAACGCGGCAATAAGGATAAGCGGACAAGAGATTACTGTAGGAGATAAGAGTATAAAAGACCTCAGCTTTGCGTACACATCAGGAAGCTACTCTACTAGCACAGGAGGGGGTAGGAGGTATGACGAAGCGGGTGTGCTAGGCCAATCCCTACTTCTGGAGCATTATAACAGATCCTGTCATGACTGGTGGTATAACATTTACCCTGCGGCAAATATGAACCTTAGGATAACCCCCGGAGGTAATATAACCACAACAGCGTATATAGAGATAACGCACATGGCTTTGAGGGCTACATATAAATACCCTACATTGAAGGTTGGAGACCCTATAAGCTTTGAGATGACGGCTAACGAGATAAAGATGCGGGACGAATCTAACAACTCTATCAGTATAGCAAAAGTAGGCTCTGGAAGGCGCTTGAAGAAGTCTTACCCACAATTTAAGGTGACCCTCCCTGGCCAGACCAACCTAACACCGCCTACGATGAGGGCAGGGGCTAGTGTTTATACTCAACCCACTAGCTCTGTAGTCATTGTGGGATTGACCACGTACACTAAGACCGAGGTCATTTCAGAGACGCCTATACCGGATGAGTTCTTCAATAGAGTTAAAACTTGCCACATTAGTGGGGGGTTAATAAATGGAACCTTGTCGATGTCATCCTATGGCATGAACAAGACTATAGGGCTATCTAATATACGCGTGACTACTAGCCAGATTAACGCAGATACTAGCTTGCCCGTGGGGCAGCTAGCGTCATATAACTTCTACATAGAACAAAATATGAGTTATTATGACTTCTATTACATTCAAGCTACATATAGTAATGGGAATAAAGGGTCGGTTCAGATAAATTATAACGCCGAGGTTATAGGCAACACATATAGAATAACTAGAGTAACCAGAAGTACCTTGAGTAGCTCTCACATTCGTGGGTCTGTTATAACGGATTTTAACATAACTAGGTACTATGATGAGGTGCAGAGCGGAGTGGCGGACAATCAATTAGTCATAAACTACCCCGAGGTGAGGTTTAATCTACTGCTTTTGGGGGTTGAGGACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e9fce9d16f4bd1a182d95d7263ae36fe8c7fd6e2929c825df921eb08d000eed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2275
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50