Protein

View in Explore
Genbank accession
QQO87936.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVASGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVTTLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEIHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLAADTDMNPENDRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGLGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTSNQGMTIDAPHSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALQLRIHKLTKTLDSGALYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDAAVRDNGAISMYLEGDNLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72912,74710 Da
isoelectric point:5,05079
aromaticity:0,08480
hydropathy:-0,16944

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR015331
IPR040775
RBD
96–132
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
QQO87936.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO87936.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9926
Central domain 155 600 447 0,9905
C-terminal 601 684 83 0,8469
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-600
C-terminal
601-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_ER20
[NCBI] 		2801565 No lineage information
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO87936.1 [NCBI]
Genbank nucleotide accession
MW355462.1 [NCBI]
CDS location
range 29058 -> 31112
strand +
CDS
ATGTCTAGTGGTTGCGGCGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCAGGTGGCGCAGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACCCTGCCTGCTGTTTTACGCGATGCTGGTTTCTCCCCGGCGTCTTTCAACTTCACAACCGGCGGGACCCTGGGAGCTGACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTCCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGTGTTCTTATTGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGCGCTACAACGCCGTGGGTGATTAAACCGTGGACCGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGACCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTTCCTGGTATAGAATCACTCCTCCCTCCGGAAGCTAAAGACCAAAACATTTCGTCTGTCCTTGAGATACGGGAATGTACGGGCGTTGAGATTCATCGGGCTAGCGGTCTTATGGCGTGCTTCCTGTTCCGCGGGTGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGAGGGAAGGACGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGTAAGGGTAACTATGTCATTGGCGGCCGCACGAGCTACGGCTCAGTAAGTAGCGCGCAATTTTTACGTAACAATGGTGGTTTCGCGCGCGATGGTGGGGTCATCGGGTTTACCTCATATCGTGCGGGGGAAAGTGGTGTTAAAACATGGCAAGGTACGGTAGGTTCTACTACATCTCGTAACTACAACCTGCAATTCCGGGATTCTGCGGTACTATACCCTGTATGGGACGGCTTCGATTTAGCCGCAGATACTGACATGAACCCAGAAAATGACCGCCCGGGGGATTTCCCATATTCCCAATACCCGGTACATATGCTCCCTCTAAACCATTTAATTGACAATCTACTGGTTAGGGGTTCTTTGGGGGTAGGTTTAGGCATGGACGGGCAGGGCCTATATGTTTCAAATATAACTGTAGAGGATTGTGCAGGTTCGGGTGCGTATCTTCTTACTCATGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAAAACTTCCCCGCGAACCAGATATACATCTCAGGGGCATGCCGTGTGAACGGCCTTCGCTTAGTCGGCATCCGGTCTACCAGCAACCAGGGTATGACGATAGACGCACCTCACTCTACTGTAAGCGGAATAACGGGCTTCGTGGACCCATCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCCGCGGCTCTACAGTTGCGTATCCACAAACTGACAAAAACCCTTGATAGCGGAGCATTGTACTCCCACATAAACGGCGGGCCAGGTTCTGGTTCGGCATGGACCGAAATTACCGCTATTGCAGGGAGCTTGCCCGATGCCGTGTCATTAAAAATAAACAGGGGGGACTATCGTGCTGTTGAGATACCTGTAGCAGTAACCGTTTTACCTGATGCTGCGGTTCGTGATAACGGGGCTATCTCAATGTATCTGGAAGGTGATAACCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0346b5c75807fe1648ab06e265c471b7053ca02f51501784c3a4bbb634309f3f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6795
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi Rodwell,E.V., Wenner,N., Pulford,C.V., Cai,Y., Bowers-Barnard,A., Beckett,A., Rigby,J., Picton,D., Blower,T.R., Feasey,N.A., Hinton,J.C.D. and Perez-Sepulveda,B. — — GenBank