Protein

View in Explore
Genbank accession
YP_008125494.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,52
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MAELRSTTAIGGNIVWHGGNLRFDPQGETVLYNGYKLYTENDKPDPHTDLTEAVVKLAGDTMSGDLTIYKSSAQLHLSSFANTDASLYLTEDNGNHGVRYHYDGTVNQWQLIRRESGVENVVMYGSRSNNNIVVNGIGYLNTTQRIFADNYHPNADKWTTARTLTLAGEVTGSVSIDGTSNVTINAVLPNHTTFEEVGISASNSNYRATGKTDNGGDTTSDLDALTQAGTYYKIVGSTAINLPPNGTGYWYLQNYTYGTSGNLTQLAIPYGTSAGNGTISFRTRYGGVWDDWSTLYHTEFHPEADKWTTARTLTLSGDVTGSVSIDGSSNVTLSTVVGNDSHTHDGRYYTETESDARFVNVTGDAMTGFLTLPNTNANATNIIYGFGGTSNGLRGSMQYTSGDVSDITRSGFIDVGASVTGRPAGETGWLWGIHTEHNNANGYSMNLAVGQNTQRLWWQSTIATTAGDWVAVFDDEYHPNADKWTTARTISLSGDVSGSVAIDGSGNVTLPVTVNRAAGFNVNTNDGSTPFRIQRNSFAQTGQDDNVTVHLTDTELFFTHNNDDDGDSSAYTFRYMSAGAPVNLLNFSSGSITYRGNAVWHAGNDGSGSGLDADLLDGLQSTQLLRSDTGGTINGQVTIRHTNVQLNLMDSTYSDNYWQLDHQNGVMAFRYNGGTEDFRLNENGTATFLHTVTAPTFTGALSGNASSATKLLTSRTFTIGNTAKSFDGTANVSWSPEELTGAEGDANISFGTGQAVTTAEFLSLLNTKGAFSTQYWVCRGSWSYAAQVVVDTGVGKFGTAGSVIEVIGKSQTGCTIRVTTATTSSGGGNTRREFIYIDNGSTYSPGWRTGYSNHYHPNADTWTTARTLTLAGDLSGSVSINGGSNVTLTAAVANDSHTHDTQYVKTSGSSTITNGTLNADGAALGVSNSGYQNLMQIRSDTGVAGYWCRFRASGSGLSGWLFSNFDSPVARISTGGWYYGTGMIINELKLGGEVVLNESTDRTDLLMIKSSTSAWGGLQISNSANEGIWSFMTDGATCGIYDDQNGDWAVQMTENAGVRLYYNSANRIETTSAGVTVTGALTASGNVTAYSDSRLKTNVEKIVNPLDKIDELNGYTYDRTDIEERQTGVIAQEVLKVLPEAVIEDDDGMYSVAYGNMVGLLIEGIKEEKRKREALEERLARLESLIS
Physico‐chemical
properties
protein length:1187 AA
molecular weight: 127332,37430 Da
isoelectric point:4,78433
aromaticity:0,09267
hydropathy:-0,37936

Domains

Domains [InterPro]
DC_1903
ATT
1–289
DC_1903 DC_0056
IPR005601
STR
58–186
IPR005601 cd19958 IPR030392
DC_1903
ATT
237–441
DC_1903 IPR030392 Coil
YP_008125494.1
1 1187
Architecture
ATT
ATT
ATT 1-441 | ATT 446-1186 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008125494.1
1 1187
Domain Start End Length (AA) Confidence
N-terminal 1 450 450 0,1660
Central domain 451 649 200 0,1771
C-terminal 650 1187 537 0,8823
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-450
Central
451-649
C-terminal
650-1187

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage nt-1
[NCBI] 		115992 Uroviricota > Caudoviricetes > Pantevenvirales > Mylasvirus > Mylasvirus persius
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008125494.1 [NCBI]
Genbank nucleotide accession
NC_021529 [NCBI]
CDS location
range 80825 -> 84388
strand -
CDS
ATGGCAGAATTACGCTCAACAACCGCAATTGGCGGTAATATAGTATGGCACGGAGGTAATTTACGTTTCGATCCACAAGGCGAAACTGTACTTTACAACGGATACAAGCTATACACAGAAAACGACAAGCCAGATCCCCACACAGACTTGACAGAAGCAGTTGTAAAACTTGCTGGTGATACGATGAGCGGTGATTTGACGATTTATAAATCATCAGCACAATTGCATTTAAGCAGCTTTGCGAACACAGATGCTAGTTTGTATTTGACTGAAGATAATGGAAATCATGGTGTTCGTTATCACTATGACGGTACTGTAAATCAGTGGCAATTAATCAGGCGTGAAAGTGGTGTTGAAAATGTTGTAATGTACGGTTCTCGTTCAAACAACAATATCGTTGTTAATGGTATTGGGTACTTAAACACAACTCAGAGAATTTTTGCAGACAACTATCACCCAAATGCAGATAAATGGACAACTGCACGTACGCTGACATTAGCAGGTGAAGTGACTGGGTCGGTATCAATCGACGGCACATCAAACGTTACGATAAATGCTGTTCTACCGAACCATACTACATTTGAAGAAGTTGGTATAAGTGCGTCTAATTCAAATTATCGAGCAACGGGTAAAACTGATAACGGTGGCGATACAACGTCAGATCTTGATGCGCTAACTCAGGCAGGTACGTATTATAAAATCGTTGGTAGCACTGCTATTAACTTGCCGCCAAACGGAACTGGGTATTGGTATCTACAGAATTACACATATGGAACATCTGGCAATCTTACTCAACTAGCAATACCATACGGGACATCTGCTGGCAACGGTACAATATCGTTCAGAACACGATACGGTGGTGTTTGGGATGATTGGTCAACTCTATATCACACAGAGTTTCACCCAGAAGCTGATAAATGGACAACAGCTCGTACGTTGACGCTTTCAGGTGATGTTACTGGTTCAGTTTCGATTGATGGTAGCTCTAATGTGACATTATCTACAGTTGTTGGCAATGACTCACACACGCACGATGGTCGTTACTATACTGAAACAGAATCAGATGCTAGATTTGTGAATGTTACTGGCGACGCAATGACTGGTTTCTTGACACTGCCAAACACAAACGCAAACGCTACGAATATCATCTATGGGTTTGGTGGTACAAGTAATGGTCTTCGTGGATCAATGCAATATACGTCTGGTGATGTGTCTGATATAACTCGAAGTGGGTTCATTGACGTTGGCGCATCAGTAACAGGCAGACCAGCAGGTGAAACTGGATGGCTATGGGGTATCCATACTGAGCATAATAATGCAAATGGTTACTCGATGAACCTTGCAGTCGGTCAAAACACACAGCGTCTATGGTGGCAAAGTACAATAGCAACAACTGCTGGTGATTGGGTTGCTGTATTTGATGATGAGTATCACCCAAATGCAGACAAGTGGACTACTGCACGTACAATTAGCCTATCTGGTGACGTGTCTGGTTCTGTTGCTATAGATGGTTCAGGTAATGTCACTCTTCCGGTGACAGTAAACCGCGCTGCTGGCTTTAACGTAAACACTAATGATGGTTCGACTCCATTTAGAATACAGCGAAACAGCTTCGCTCAGACTGGACAAGACGATAACGTAACTGTACATCTGACAGATACTGAATTATTCTTCACTCATAATAACGATGATGATGGTGATTCGTCAGCATATACCTTCAGATACATGAGTGCGGGTGCGCCCGTTAATTTATTGAATTTCTCAAGTGGTTCTATCACGTATAGAGGAAATGCAGTATGGCATGCTGGCAATGATGGTTCTGGTAGTGGTCTTGATGCAGACCTACTTGATGGTCTACAAAGTACACAGCTCTTGCGCTCTGATACAGGTGGGACGATTAATGGTCAGGTGACAATTCGCCATACTAACGTTCAGTTGAACTTGATGGATTCGACATACAGCGACAACTACTGGCAGCTAGATCACCAGAATGGTGTTATGGCATTTAGATACAATGGTGGCACTGAAGACTTTAGATTGAATGAAAACGGTACAGCTACATTTCTACACACTGTAACTGCACCTACATTCACCGGGGCTCTTAGTGGCAATGCATCATCTGCAACTAAGTTGCTAACATCAAGAACGTTCACTATCGGAAATACTGCAAAGTCATTTGACGGTACTGCTAACGTGTCATGGTCTCCTGAAGAACTGACTGGAGCTGAAGGTGATGCAAACATATCGTTTGGTACTGGTCAAGCTGTAACTACTGCTGAATTTTTATCTCTGTTGAATACTAAAGGTGCATTTTCAACTCAATATTGGGTTTGTCGTGGTTCTTGGTCGTATGCTGCTCAAGTTGTGGTTGACACCGGTGTTGGCAAATTCGGAACTGCTGGTTCAGTCATTGAAGTAATCGGCAAATCGCAAACCGGGTGTACGATTAGAGTTACAACGGCGACTACTAGCTCAGGCGGTGGTAATACACGCCGCGAGTTTATATACATTGACAACGGTTCGACTTATTCTCCTGGGTGGCGAACTGGATATAGCAATCACTATCACCCAAATGCAGACACGTGGACTACTGCGCGTACTCTGACATTAGCTGGCGATCTATCTGGTTCTGTATCAATCAATGGTGGGTCTAATGTAACATTGACGGCTGCTGTTGCAAACGATTCGCACACTCACGATACTCAGTATGTGAAGACAAGCGGAAGCAGTACGATTACAAACGGAACATTAAACGCAGATGGTGCTGCTTTAGGCGTATCTAACAGCGGCTATCAAAATCTGATGCAGATTAGGAGCGATACTGGTGTCGCTGGTTACTGGTGTCGTTTCCGTGCTAGTGGTAGTGGTCTGAGTGGTTGGTTATTCTCAAACTTCGATTCACCCGTTGCGCGAATCTCAACTGGTGGGTGGTACTATGGCACCGGGATGATCATCAATGAATTGAAGCTTGGTGGTGAAGTTGTTCTAAATGAATCAACTGACCGTACTGACTTGTTGATGATTAAGAGTTCTACTTCTGCATGGGGTGGTTTGCAGATATCAAACTCTGCAAACGAGGGTATCTGGTCGTTCATGACAGACGGCGCGACGTGTGGTATTTACGATGATCAGAATGGCGACTGGGCTGTTCAGATGACTGAAAATGCTGGTGTTCGTCTGTATTACAACAGTGCCAATAGGATAGAAACAACATCTGCTGGTGTGACTGTTACTGGCGCATTGACTGCATCCGGTAACGTAACTGCATACTCAGATTCACGTTTGAAGACAAATGTTGAGAAAATCGTTAACCCGCTTGATAAGATTGATGAACTAAACGGTTACACATATGACCGTACCGATATCGAAGAACGTCAAACGGGTGTTATTGCTCAAGAAGTTCTAAAAGTACTACCTGAAGCAGTAATCGAAGATGATGATGGTATGTATTCAGTAGCATACGGAAACATGGTTGGTCTTTTGATCGAAGGCATCAAAGAAGAGAAGCGCAAGCGTGAAGCACTAGAAGAGCGACTTGCAAGACTCGAATCATTAATAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f763f48132aa147f0269c25e03e004e13d0b519b34b16f487b8141981e104653
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5447
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage nt-1 Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank