Protein

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Genbank accession
ALF02475.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTNITPNIVVSQPSQLFTLARSFKANANGKIYIGKIDTDPVNQENQIPVYLEREDGTHVQVAQPIVINSAGYPVYNGQIAKFVTVQGHSMAVYDRCGVQQFYFPNVLKYDPDQFEKRLSGNDGFKFIGRVPDIDTLRTIHGKDGDAVILEAYRVGDGLGESVVYWDATSTKNDNGGTVFAVSGVATGRWIRKYKTLEAKMFGLPKEGDCYDEMAAIEAIMFEEGVDCIFYDGIYAITGSRNMPWRGSDLNNFKSYKGASIRCIGNVVFSTKSPDGADVFQMNCVSDLNIIGFPVLKGTLTRGDSSGTNGVSITNGGKNIFIEVEADSLPFTVTSSGLDGGKAVTIQNGPSAVLPYQNIKINCRRAHNCPYGFEMSIVGDSLINNPNSGIEVDIYAENCYRGVAIGSSENTKEIPTNGLNHGVKVRAILKDCQQDIVVIRDWGLDIEATVIQTKDPFMYNPHDSKREVLESAGSKYSRIKISGIKLAVDSLYTIGGIHYSPSVSGRTGQAEWCVYDLNVTTQVATTTLTVMDSGGVTAKNNTLRSSTLSAVDVIAFISNGNTVTIGVP
Physico‐chemical
properties
protein length:567 AA
molecular weight: 61504,66440 Da
isoelectric point:5,43986
aromaticity:0,08642
hydropathy:-0,16596

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 IPR059934 DC_2031
IPR036730
ATT
2–111
IPR036730
IPR036730
ATT
7–109
IPR036730
ALF02475.1
1 567
Architecture
ATT
RBD
STR
ATT 1-113 | RBD 129-204 | STR 205-567
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALF02475.1
1 567
Domain Start End Length (AA) Confidence
N-terminal 1 211 211 0,9949
Central domain 212 500 290 0,9872
C-terminal 501 567 66 0,9306
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-211
Central
212-500
C-terminal
501-567

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEN22
[NCBI] 		1647458 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. diarizonae
[NCBI] 		59204 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALF02475.1 [NCBI]
Genbank nucleotide accession
KT630648.2 [NCBI]
CDS location
range 18550 -> 20253
strand +
CDS
ATGACTAACATCACGCCAAATATTGTTGTATCACAACCAAGCCAGTTATTTACTTTAGCGCGTTCTTTTAAAGCAAATGCTAATGGCAAAATCTATATTGGTAAGATTGACACTGACCCGGTAAACCAAGAAAACCAGATCCCTGTATATCTGGAACGAGAAGATGGTACTCATGTTCAGGTGGCACAGCCAATTGTTATCAATTCTGCAGGCTATCCGGTATACAACGGACAGATTGCAAAGTTCGTGACTGTGCAGGGACACAGCATGGCTGTGTATGATAGGTGTGGGGTGCAACAGTTCTATTTCCCGAATGTACTGAAGTATGATCCAGACCAATTTGAGAAGAGACTGAGCGGGAATGATGGATTTAAATTCATTGGTCGAGTTCCTGATATTGATACTCTGCGTACTATTCATGGTAAAGATGGTGATGCTGTTATTCTGGAAGCGTACCGGGTGGGTGATGGTCTTGGCGAGAGCGTCGTTTATTGGGATGCTACATCAACTAAAAATGACAATGGCGGAACAGTATTTGCGGTATCTGGTGTTGCAACTGGAAGATGGATTCGTAAGTATAAAACTCTAGAAGCAAAAATGTTTGGTCTTCCAAAAGAAGGGGACTGTTACGACGAGATGGCGGCTATCGAGGCCATTATGTTTGAGGAAGGCGTGGATTGTATTTTCTATGACGGAATCTATGCGATTACTGGATCCAGAAATATGCCGTGGCGCGGTAGCGACCTGAATAATTTCAAATCGTACAAGGGGGCCAGCATTCGCTGCATTGGTAATGTAGTTTTTTCAACAAAATCTCCTGATGGTGCTGATGTATTCCAGATGAACTGTGTTTCCGATTTAAATATTATCGGATTCCCAGTTCTTAAGGGTACGCTCACTAGAGGTGATTCCTCCGGAACAAATGGCGTATCAATAACCAACGGAGGGAAAAATATATTCATTGAGGTTGAGGCTGATTCATTACCTTTCACCGTGACAAGTTCAGGACTAGATGGTGGAAAAGCTGTAACTATACAGAACGGGCCTTCAGCGGTACTCCCTTATCAAAATATAAAAATTAATTGTCGGAGAGCGCACAACTGCCCATATGGCTTTGAGATGTCGATAGTAGGAGATTCACTGATAAATAATCCAAATTCTGGCATAGAGGTAGATATTTATGCTGAGAACTGTTACAGAGGCGTTGCAATCGGCTCTAGCGAGAACACCAAAGAGATACCGACAAATGGATTAAACCATGGTGTAAAAGTTAGAGCTATTCTTAAAGATTGTCAGCAGGATATCGTTGTTATAAGGGATTGGGGTTTAGACATTGAGGCGACGGTAATCCAGACTAAAGACCCTTTTATGTACAATCCACATGACTCAAAAAGGGAAGTTTTGGAGTCTGCTGGCTCTAAGTACTCACGCATAAAAATATCCGGAATAAAATTGGCTGTCGATTCACTGTATACAATAGGGGGGATTCATTATAGCCCATCCGTCAGTGGGAGAACCGGTCAAGCCGAGTGGTGCGTATATGACCTTAATGTTACGACGCAAGTCGCTACAACAACACTTACTGTCATGGATTCAGGTGGTGTTACCGCAAAAAATAACACGCTCAGGTCATCTACACTATCAGCAGTAGATGTGATTGCATTCATATCCAATGGTAATACCGTAACTATAGGCGTTCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
69e61c8e1eb5d6ad72081b09ba4f9891aad5b19b975d0c7680cc95dde7f63d19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phages of Salmonella enterica subsp. salamae and subsp. diarizonae: novel phages with a mosaic genome structure and activity against pathogenic S. enterica subsp. enterica isolates Pastekova,L., Bosak,J., Dedicova,D., Benada,O., Smarda,J. and Smajs,D. — — GenBank