Protein

View in Explore
Genbank accession
XPK41233.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MSQILEFWKGLSGAVLPFAGANAPTGWLMCDGSAVSRTTFAELFASIGTTYGTGDGSTTFNLPDLRGRVAAGKDNMGGTPANRLTAAGAGITGTALGATGGSQTHTMTTGQMPAHSHGVNDPTHAHSVYDPTHTHAVYDPGHVHSYGRVTTGNGQGSDIGTANNHVTANTGAATTGISLYASATGIGIYGAATGISIQNQGGGAAHNITQPTIVLNHIIKI
Physico‐chemical
properties
protein length:221 AA
molecular weight: 22212,26390 Da
isoelectric point:6,61381
aromaticity:0,05882
hydropathy:-0,10045

Domains

Domains [InterPro]
DC_1651
STR
5–221
DC_1651
IPR037053
ATT
10–66
IPR037053
SSF88874
STR
11–221
SSF88874
IPR011083
ATT
13–69
IPR011083
XPK41233.1
1 221
Architecture
ATT
STR
ATT 5-69 | STR 70-221
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK41233.1
1 221
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0333
Central domain 11 209 200 0,0045
C-terminal 210 221 11 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-221

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HeidiAbel_Bas97
[NCBI] 		3398415 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK41233.1 [NCBI]
Genbank nucleotide accession
PQ850606.1 [NCBI]
CDS location
range 13209 -> 13874
strand +
CDS
ATGAGTCAGATATTAGAGTTTTGGAAAGGATTGTCGGGCGCTGTTCTTCCATTCGCTGGCGCTAATGCACCGACCGGCTGGCTAATGTGCGACGGTTCAGCAGTAAGCCGCACCACATTTGCCGAGTTGTTCGCGTCTATCGGAACCACCTATGGAACTGGTGATGGTTCAACTACTTTCAACCTTCCAGACCTGCGCGGGCGCGTAGCGGCTGGCAAAGACAACATGGGCGGAACCCCTGCTAACCGGCTAACAGCAGCAGGCGCAGGAATTACCGGCACGGCACTTGGCGCAACTGGTGGAAGCCAGACGCACACCATGACAACGGGGCAGATGCCAGCGCATAGCCACGGCGTGAACGACCCTACGCACGCGCATTCTGTTTATGACCCTACACACACGCACGCCGTCTATGACCCCGGACACGTTCACTCTTATGGCAGGGTTACGACCGGTAACGGGCAGGGTTCTGATATTGGTACGGCAAACAACCACGTCACCGCAAACACCGGGGCTGCAACAACTGGCATCAGCCTTTATGCTTCTGCAACTGGCATCGGGATTTATGGAGCCGCAACCGGAATCAGCATCCAGAACCAGGGCGGTGGGGCGGCACACAACATCACACAGCCAACAATTGTTCTGAATCACATCATCAAGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d25dc0516f5e0715e909a1a227f044edcfd0ec3a3a7e17bdbeaab971e37ebebc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7243
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank