Protein

View in Explore
Genbank accession
XVB93820.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTTPTQNDIPSSTAIDVRFNAEKIDEVVNSDNETYQDRFGNSRFTLKGLAVQVSNFFSSLIGSTGGNSIGIEQGGTVQDGMKYVTPEMMRINGNRYLHGITEDAVPYIQAAIDYGKAKSMAVWLSGTYYCLTAPQSVPLPADDGTAYPAWVTAGTDANLSPETVYYLAAHLRLYDGSVIIGSGRFTTNLISTFSRSADKVVLTQPAMFYIEGANGINGTVQYQLRNLKISNALIGRIVRGISYKSFEDDVEFSSVGIAGVKQGEEQCNHGHITITGYAGDTTGGWWLQRNNATSSAYVPPYPGTDVWPLGWCDSSSYEYLCFTGYPYTGTDAAVHDAINNFFNTYFFKQNNSKTTATGGRLTNGSSNSYSIQPFRGITGRARYISSRYSRQNSLNVIKVLKTLFTIRAPVYMDNCTTTCKVINAMIESVGLIARGVGASSGNYYGIDVADPWGASTTIWGVEGGGGLESQTVIFSRPGKPSANARVSTSVGQINETWALDTTDYRLFALREWNPSSQVQTYLYDFYRTYCKMKPIVFYDGGPQFNYSTGTATPKVSLAGTVVTPTTAKTTYYTYGKLLYCTIYVNFSSLTVAANSEINITTPNNNGAWDVAGQGIGKAYFSHITDGTVITPTVDAASWNIRFRLGSGSTVYTLPAGTYTNLTIIVNLEYLQA
Physico‐chemical
properties
protein length:672 AA
molecular weight: 73142,84240 Da
isoelectric point:6,34496
aromaticity:0,12054
hydropathy:-0,18676

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93820.1
1 672
Domain Start End Length (AA) Confidence
N-terminal 1 104 104 0,9893
Central domain 105 477 374 0,9796
C-terminal 478 672 194 0,9711
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-104
Central
105-477
C-terminal
478-672

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93820.1 [NCBI]
Genbank nucleotide accession
PV662128 [NCBI]
CDS location
range 150863 -> 152881
strand -
CDS
ATGACGACTCCAACACAAAACGATATACCCAGCAGTACTGCTATAGATGTCAGATTCAATGCAGAGAAGATCGACGAAGTCGTTAATAGCGATAACGAAACTTACCAGGATCGTTTTGGTAATTCGAGATTTACTTTAAAAGGGTTGGCGGTTCAAGTCAGTAATTTCTTTTCCTCGCTTATAGGGTCCACCGGGGGGAATAGCATAGGGATAGAACAAGGTGGGACCGTGCAGGACGGGATGAAATACGTCACTCCCGAAATGATGAGAATAAACGGCAACCGATATTTACATGGGATTACAGAAGATGCTGTCCCTTATATTCAAGCCGCCATTGATTACGGTAAAGCCAAATCGATGGCAGTCTGGTTGTCGGGAACCTATTATTGCTTGACGGCTCCCCAATCAGTTCCTCTTCCTGCTGACGACGGAACGGCCTATCCGGCGTGGGTAACGGCAGGAACTGATGCTAATCTCTCGCCAGAAACGGTTTATTACCTGGCCGCGCATCTGCGTCTTTACGACGGGTCGGTTATAATCGGGTCGGGAAGGTTTACAACAAATTTAATTTCTACCTTCAGCAGATCAGCCGATAAAGTAGTTTTAACCCAGCCAGCTATGTTTTATATAGAAGGAGCTAATGGGATTAACGGTACCGTTCAATATCAACTGAGAAATTTAAAAATTTCTAACGCTCTGATTGGCAGAATAGTAAGAGGAATTTCCTATAAGTCCTTCGAAGACGATGTTGAATTTTCTTCGGTTGGAATCGCCGGGGTTAAGCAAGGGGAGGAACAGTGTAATCACGGTCATATCACCATAACGGGTTATGCGGGGGATACAACTGGGGGTTGGTGGTTGCAACGCAATAACGCAACCAGTAGTGCTTATGTTCCGCCTTATCCCGGCACCGACGTGTGGCCATTAGGATGGTGCGACAGTTCCAGCTACGAGTATCTCTGCTTTACAGGGTATCCTTATACCGGGACTGATGCTGCTGTCCATGACGCGATTAATAACTTTTTTAACACCTATTTCTTTAAACAAAATAATAGTAAGACCACCGCAACCGGGGGGAGATTAACCAATGGTTCTTCCAACAGTTATTCTATCCAGCCATTCAGAGGAATTACTGGAAGAGCCAGGTACATATCCAGTCGTTACTCGAGACAAAACTCTCTTAATGTAATAAAAGTGCTGAAAACTTTATTTACGATTAGAGCGCCAGTGTATATGGATAACTGCACCACCACGTGTAAAGTTATTAACGCGATGATCGAATCGGTTGGTTTAATTGCCCGCGGCGTGGGCGCGTCATCGGGCAACTACTATGGGATAGACGTGGCTGATCCTTGGGGAGCCTCAACTACTATTTGGGGGGTAGAAGGCGGTGGGGGGCTGGAAAGCCAAACTGTTATCTTCTCCCGGCCCGGTAAGCCGTCAGCCAACGCAAGAGTTTCTACCAGTGTAGGGCAAATTAACGAAACATGGGCGTTAGACACTACTGATTACAGGTTGTTCGCCCTTAGGGAATGGAATCCGTCATCTCAGGTTCAAACATATCTCTATGATTTTTATAGAACCTATTGTAAAATGAAGCCTATCGTTTTTTACGACGGCGGACCTCAGTTCAATTATTCGACCGGAACAGCTACCCCTAAGGTGTCATTAGCCGGCACCGTGGTAACGCCGACGACCGCTAAAACGACATACTATACTTATGGTAAACTTCTATATTGCACAATATATGTTAACTTTAGTTCTTTGACTGTAGCGGCGAATTCGGAAATTAATATAACAACCCCCAATAATAACGGGGCGTGGGATGTGGCGGGTCAGGGGATAGGTAAGGCCTACTTCTCCCACATTACTGACGGAACCGTCATAACACCTACCGTCGATGCCGCATCCTGGAATATTAGATTTAGATTGGGGTCTGGAAGTACAGTGTACACTTTACCCGCCGGAACATATACGAATTTAACGATTATCGTTAACTTAGAATATCTGCAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a644c406d702fe76af8137a1ab16543c8784d8e51d138553038578b7102252e3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8647
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank