Protein

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Genbank accession
AFX93505.1 [GenBank]
Protein name
putative pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVTKNTSYHPLMGDVEPATYYRRGSFQDGGFVQIPDDIIKHSDGNWYRYKNAIPAGGVPVLPGTSPDSNWELVGLRGDVVDRLGTTSGFRFVGQAASIAEVRAIEPTKPNERILMKQYGPIKGVGGGEFWYDELDTTTADNGGTILVTAGGKRWKKIMKDTGYSAEDFGADPNGVADSRAAIQAAIDFVGTLKNKILYLTGTYRIEGDTTITLANGVQLLGTRRGMTQGPQTILGDTMKVVNDTTFHVAMTPGKTTPLFTAGRDAVFSGFSVVYINQPKEAATINDILTYGPTIWASHSCSVVNVRYVAAWDFFNGRGEAHFLSDIYGYAFNVDFHIEMCADVTRLKNIHINSNVYRPGWSILDVAAPRVTSRAFEMVQHDGIMFEGIHVFAKGTVWHNRQNSTARLCSLNGTDFLFDKCGTMLDSDVNGGVCCSLSNGVFIHDYHTNEGAALNLTNPVGTQVTSYYLTDWKWQLGSAGTSPGQGSWAANWMNFNSAAGTRVWLDNINILAMGTLALNNNAQFNRVEGSVTIGTRKINFRPQNANLVENHRLVSIDPFTNIPYGFTKLGTAVTVSGRNVTSTAATSPTGLGISTRVAQTFPSSCAVWVYASQKGDSSGILVTAYLAGFTNPITFSAQWEAMGNSWLARLEVPSSAGRTHWDITANAPSATGGTLTIQSVHMIAGTTLEFSPESDSVAIHTNQVGAMRGKMTLVANVPQELPSAHFGGDRGVISLYVKSATVVGYWVLNKRLIGDTGTVTQIAYAAGAETITVDWPAGSGAKPRVMSTAGGDVDVTITGV
Physico‐chemical
properties
protein length:799 AA
molecular weight: 85896,66330 Da
isoelectric point:6,38924
aromaticity:0,09512
hydropathy:-0,10275

Domains

Domains [InterPro]
cd20481
STR
90–602
cd20481 DC_2026
cd20481
STR
91–602
cd20481
IPR011050
STR
161–516
IPR011050
IPR012334
STR
163–456
IPR012334
IPR024535
ENZ
165–229
IPR024535
AFX93505.1
1 799
Architecture
STR
RBD
STR 90-602 | RBD 603-799
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFX93505.1
1 799
Domain Start End Length (AA) Confidence
N-terminal 1 175 175 0,9897
Central domain 176 541 367 0,9920
C-terminal 542 799 257 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-175
Central
176-541
C-terminal
542-799

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage phiMAM1
[NCBI] 		1262513 Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus MAM1
Host Serratia sp.
[NCBI] 		616 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFX93505.1 [NCBI]
Genbank nucleotide accession
JX878496 [NCBI]
CDS location
range 32722 -> 35121
strand +
CDS
ATGGTCACCAAAAATACTTCGTACCACCCGCTCATGGGTGACGTCGAACCAGCTACATACTACCGCCGGGGTTCGTTCCAGGATGGTGGTTTTGTTCAAATCCCAGATGACATAATCAAACACTCTGACGGAAACTGGTATCGCTACAAGAATGCTATCCCAGCTGGCGGTGTTCCGGTGCTTCCAGGGACTTCTCCGGACTCTAATTGGGAGTTGGTAGGGTTACGTGGGGATGTGGTAGATCGCCTCGGTACGACCAGCGGGTTCCGTTTTGTTGGACAAGCTGCCAGTATCGCTGAAGTCCGTGCCATTGAGCCAACCAAACCCAACGAACGGATACTGATGAAGCAGTATGGTCCGATCAAAGGTGTGGGTGGTGGTGAATTCTGGTATGACGAACTGGATACCACCACTGCAGACAATGGTGGTACTATCCTCGTGACTGCTGGAGGCAAACGCTGGAAGAAGATCATGAAGGATACCGGGTACTCGGCTGAAGACTTCGGAGCTGACCCAAATGGGGTGGCCGACTCCCGTGCTGCTATCCAAGCCGCAATTGACTTCGTCGGCACTCTGAAGAATAAGATCCTGTATCTGACTGGCACTTACCGGATTGAAGGCGACACGACCATCACCTTGGCCAATGGCGTACAATTGCTGGGTACTCGTCGTGGTATGACCCAGGGACCACAGACTATTCTCGGTGATACGATGAAGGTGGTCAATGACACGACCTTCCATGTTGCCATGACTCCAGGCAAAACCACACCGCTATTCACCGCCGGGCGTGATGCTGTGTTCTCTGGGTTTTCCGTCGTGTATATCAACCAGCCGAAAGAAGCCGCGACCATCAACGATATCTTGACTTATGGTCCGACGATTTGGGCAAGTCACTCTTGCTCGGTTGTGAATGTTCGCTATGTCGCTGCCTGGGACTTCTTCAACGGTCGGGGTGAAGCACATTTCCTCAGTGATATCTACGGCTACGCCTTCAACGTTGACTTCCATATTGAAATGTGTGCTGACGTCACGCGCCTGAAGAACATCCACATCAACTCAAACGTTTACCGTCCTGGCTGGTCTATCTTGGATGTGGCTGCACCGCGCGTTACCAGCCGAGCATTCGAAATGGTACAACATGACGGCATCATGTTCGAAGGGATTCACGTGTTCGCCAAGGGTACAGTCTGGCACAACCGCCAAAACAGCACTGCGCGTCTCTGTTCCCTGAACGGTACGGACTTCTTGTTTGATAAATGCGGTACAATGCTGGACTCTGATGTCAACGGCGGCGTCTGCTGCTCCCTGTCCAACGGGGTGTTTATCCATGACTACCACACCAACGAAGGAGCTGCACTGAACCTGACCAACCCGGTAGGCACTCAGGTAACTTCTTACTATCTGACGGATTGGAAATGGCAGCTGGGTTCGGCTGGTACGTCCCCAGGACAAGGCTCTTGGGCGGCAAACTGGATGAACTTCAACAGCGCAGCAGGTACTCGTGTGTGGCTGGATAATATCAACATCCTGGCCATGGGGACTCTTGCCCTTAACAACAATGCCCAATTCAACCGGGTCGAGGGTAGTGTCACCATCGGCACACGCAAAATTAATTTCAGACCTCAGAACGCCAACCTGGTAGAGAACCATCGACTGGTGTCCATAGATCCGTTCACCAATATCCCATATGGCTTCACCAAACTGGGTACTGCTGTGACCGTGTCAGGGCGTAACGTGACCAGCACTGCCGCAACTTCACCAACTGGACTGGGAATCAGCACTCGCGTTGCTCAGACTTTCCCTTCGTCTTGTGCAGTTTGGGTATACGCCAGCCAGAAAGGTGATAGCTCTGGTATTCTGGTGACAGCTTATCTTGCCGGGTTTACCAACCCGATAACGTTCTCAGCGCAATGGGAAGCCATGGGCAACTCATGGTTGGCGCGCCTGGAGGTTCCGAGTAGTGCCGGGCGTACTCATTGGGATATCACAGCAAACGCCCCTTCAGCCACTGGTGGTACGCTGACAATCCAAAGCGTCCATATGATCGCAGGCACGACTCTGGAATTCTCACCAGAATCCGATTCGGTGGCGATCCATACGAACCAAGTGGGCGCAATGCGTGGTAAAATGACCTTGGTGGCCAACGTTCCTCAGGAGCTACCATCGGCTCACTTCGGGGGTGATCGTGGAGTGATATCCCTTTATGTGAAGTCTGCAACCGTCGTTGGCTATTGGGTGTTGAACAAGCGACTGATCGGTGACACGGGTACAGTGACACAGATAGCCTATGCGGCAGGGGCTGAGACAATTACTGTGGATTGGCCTGCAGGTAGCGGGGCGAAGCCAAGGGTGATGTCTACTGCTGGCGGTGACGTGGATGTCACGATAACCGGTGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
89f50bfe28a21602da88a6b448f6023927d20f4a0f21df9a1f35ede781121219
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7407
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50