Protein

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Genbank accession
QIG75506.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTVTITSKTATGTTVSIGGKAAPGSKVRGEIGPTQFETTANGNGDWSASASNLPSSSIALKAREYQQLAIPVNKEMEISMARLKLTAAALQNTVHPSASANLYLDNGAPKSDRIVVFEYKLASGTEWIFDGTELTDANGNATHAMIATLEDNSYQIRATAGTVANGLIEIISNGVGVITDKPNERPILPPSYDKWIDTEKEGSYGFIGSMFITQGAAAGSALGTIPMTNSPKPGPAWSSDSPDFPIDPVTGAITMNNASKAAGTYYPTFTASNSAGSTSITVPIVVVPSTGLTRTYFVDPVNGDDTNNNGKTPATPFKTFSKANGIRGADVFSTYTIYQKRGTEQSSAGTMVFNLRNYTNIGAYGDPSAPAPLVKATASGASCIGTTVSGTLTNVSIKDHRFNFVYRGIALTDGTGCAFVRLSFEKNVDFGNAIYLHGYTNSNIYHCTLADGINGDGVYLRKFRTGRVRFCKFGIPYGTGADNLQITSERKSGMQPSNVEVSDNIFRHSVTSNALKGNCVIEDATNCVFQRNDCIGNYFCLSQLSRYVTVRDNLLKGASLNDNSFGVGTGALDHTNDCRIIFNRIENNYVGVALSGYDDPDTPPGWQRLDYEILYNTFRKNKVFGKQDRPATGFISDNVLELNNSSSILGNGGAGVSFTASNGSVVNPDYSTFTRGTNFTNAADTDSDAAKPTISGTMVAGTTATVDVPTIAGATSAVQWLINDQKSPGATALTFLLPADQPNNPNMPSFNNAPTVSCAVIYTYADGRTLIVPARYSNGWTTAAILAA
Physico‐chemical
properties
protein length:788 AA
molecular weight: 83469,97710 Da
isoelectric point:5,91008
aromaticity:0,08756
hydropathy:-0,21510

Domains

Domains [InterPro]
DC_0928
ATT
70–235
DC_0928 IPR011050 DC_2066
Coil
Unmapped
73–93
Coil IPR011050
IPR012334
STR
347–727
IPR012334
QIG75506.1
1 788
Architecture
ATT
STR
RBD
ATT 70-235 | STR 282-727 | RBD 728-785 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG75506.1
1 788
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,6276
Central domain 279 698 421 0,9808
C-terminal 699 788 89 0,4911
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-698
C-terminal
699-788

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y2_4
[NCBI] 		2509773 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG75506.1 [NCBI]
Genbank nucleotide accession
MN988546 [NCBI]
CDS location
range 37871 -> 40237
strand -
CDS
ATGACCGTCACGATTACCAGCAAGACCGCGACCGGCACGACCGTTTCAATTGGCGGCAAAGCCGCGCCCGGCAGCAAGGTCAGGGGCGAAATCGGCCCGACGCAATTCGAAACGACCGCGAACGGCAACGGCGACTGGTCGGCGAGCGCGTCGAATCTGCCGTCGTCGTCCATTGCGTTGAAAGCCCGCGAATATCAGCAATTAGCGATTCCCGTCAACAAGGAAATGGAAATTTCTATGGCCCGCCTAAAGCTTACCGCCGCCGCGCTTCAGAACACGGTTCACCCGTCAGCTTCGGCAAACCTGTATCTCGACAACGGCGCGCCGAAGTCCGACCGCATCGTGGTTTTCGAATACAAGCTTGCGTCCGGCACGGAATGGATTTTCGACGGAACCGAGTTGACCGACGCCAACGGCAACGCGACGCACGCCATGATTGCCACGTTGGAGGATAACAGTTATCAAATCCGCGCGACCGCCGGCACCGTCGCGAACGGCCTGATCGAAATCATCAGCAACGGCGTTGGAGTGATCACCGACAAGCCCAATGAACGGCCGATCCTTCCGCCGTCCTACGACAAATGGATTGATACCGAGAAAGAAGGTAGTTACGGCTTCATCGGGTCGATGTTCATCACGCAAGGTGCAGCGGCCGGTTCGGCGCTCGGCACCATTCCGATGACCAACAGCCCGAAGCCCGGCCCCGCGTGGTCGTCCGATAGCCCGGATTTCCCGATTGATCCGGTCACCGGCGCGATTACGATGAACAACGCATCGAAAGCGGCCGGCACCTATTACCCGACCTTCACCGCATCGAATAGCGCCGGCTCGACAAGCATCACCGTTCCGATCGTCGTCGTTCCGTCAACCGGCCTGACCCGTACGTATTTCGTCGACCCGGTCAACGGTGACGACACGAACAACAACGGCAAGACGCCCGCCACTCCGTTCAAGACCTTTTCGAAGGCGAACGGTATTCGCGGCGCTGACGTGTTTTCGACATATACGATTTATCAAAAGCGCGGCACCGAACAAAGCAGCGCGGGAACGATGGTTTTCAACCTTCGCAATTATACGAACATCGGCGCATATGGTGATCCGTCCGCACCGGCTCCGCTGGTCAAGGCGACGGCGTCCGGTGCGTCGTGCATCGGAACGACCGTGTCGGGCACGCTGACCAATGTCAGCATCAAGGATCACCGCTTCAACTTCGTTTATCGCGGTATCGCCTTGACGGACGGCACCGGTTGCGCGTTCGTCCGACTTTCCTTTGAAAAGAACGTCGACTTCGGTAACGCGATCTATCTGCACGGATACACGAATTCGAACATCTATCATTGCACGCTCGCTGACGGCATCAACGGCGACGGCGTGTATTTACGTAAGTTCCGTACCGGCCGGGTTCGTTTCTGCAAGTTCGGCATTCCGTACGGCACCGGAGCGGACAACCTGCAAATCACGTCCGAACGCAAGAGCGGGATGCAGCCTTCCAACGTCGAAGTGTCCGACAACATCTTCCGGCATTCGGTCACGTCGAACGCGCTCAAAGGCAACTGCGTCATTGAAGACGCGACGAATTGTGTATTCCAGCGGAACGACTGCATCGGGAATTATTTCTGCTTGTCGCAGCTTTCCCGTTACGTGACCGTGCGCGACAACCTCCTGAAAGGCGCAAGCCTGAACGACAATTCGTTCGGTGTCGGCACCGGCGCGTTGGATCACACGAACGATTGTCGAATCATCTTCAACCGGATCGAAAACAATTACGTCGGCGTGGCTCTTTCGGGCTATGACGACCCGGACACGCCGCCCGGCTGGCAGCGCCTTGACTACGAAATCCTGTACAACACGTTCCGCAAGAACAAGGTGTTCGGCAAGCAGGACCGCCCGGCGACCGGCTTCATATCCGACAACGTGCTTGAACTGAACAACAGTTCAAGCATTCTCGGGAACGGCGGCGCGGGCGTCAGCTTCACGGCGTCGAACGGATCGGTCGTGAATCCTGATTATTCGACCTTCACGCGCGGCACGAACTTCACGAACGCGGCCGACACCGACAGCGACGCGGCGAAGCCGACGATTTCTGGAACGATGGTGGCGGGAACGACCGCGACGGTCGACGTCCCGACGATTGCCGGCGCGACTTCGGCGGTTCAATGGTTGATCAACGATCAGAAGTCCCCCGGCGCGACGGCGTTGACGTTCCTCTTGCCGGCCGATCAGCCGAATAATCCGAACATGCCGTCGTTCAACAACGCGCCGACCGTGTCGTGTGCGGTGATCTACACCTACGCTGACGGTCGGACGCTGATTGTGCCGGCACGCTATTCGAACGGCTGGACAACCGCCGCTATTTTGGCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
53fe931d1a105ddf4b19e913d79d84fe5a651dec3c66e9c83c13698e7779d8d0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2849
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank