Protein

View in Explore
Genbank accession
QIG75506.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTVTITSKTATGTTVSIGGKAAPGSKVRGEIGPTQFETTANGNGDWSASASNLPSSSIALKAREYQQLAIPVNKEMEISMARLKLTAAALQNTVHPSASANLYLDNGAPKSDRIVVFEYKLASGTEWIFDGTELTDANGNATHAMIATLEDNSYQIRATAGTVANGLIEIISNGVGVITDKPNERPILPPSYDKWIDTEKEGSYGFIGSMFITQGAAAGSALGTIPMTNSPKPGPAWSSDSPDFPIDPVTGAITMNNASKAAGTYYPTFTASNSAGSTSITVPIVVVPSTGLTRTYFVDPVNGDDTNNNGKTPATPFKTFSKANGIRGADVFSTYTIYQKRGTEQSSAGTMVFNLRNYTNIGAYGDPSAPAPLVKATASGASCIGTTVSGTLTNVSIKDHRFNFVYRGIALTDGTGCAFVRLSFEKNVDFGNAIYLHGYTNSNIYHCTLADGINGDGVYLRKFRTGRVRFCKFGIPYGTGADNLQITSERKSGMQPSNVEVSDNIFRHSVTSNALKGNCVIEDATNCVFQRNDCIGNYFCLSQLSRYVTVRDNLLKGASLNDNSFGVGTGALDHTNDCRIIFNRIENNYVGVALSGYDDPDTPPGWQRLDYEILYNTFRKNKVFGKQDRPATGFISDNVLELNNSSSILGNGGAGVSFTASNGSVVNPDYSTFTRGTNFTNAADTDSDAAKPTISGTMVAGTTATVDVPTIAGATSAVQWLINDQKSPGATALTFLLPADQPNNPNMPSFNNAPTVSCAVIYTYADGRTLIVPARYSNGWTTAAILAA
Physico‐chemical
properties
protein length:788 AA
molecular weight: 83469,97710 Da
isoelectric point:5,91008
aromaticity:0,08756
hydropathy:-0,21510

Domains

Domains [InterPro]
Coil
73–93
Coil IPR011050
IPR012334
347–727
IPR012334
QIG75506.1
1 788
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y2_4
[NCBI] 		2509773 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG75506.1 [NCBI]
Genbank nucleotide accession
MN988546 [NCBI]
CDS location
range 37871 -> 40237
strand -
CDS
ATGACCGTCACGATTACCAGCAAGACCGCGACCGGCACGACCGTTTCAATTGGCGGCAAAGCCGCGCCCGGCAGCAAGGTCAGGGGCGAAATCGGCCCGACGCAATTCGAAACGACCGCGAACGGCAACGGCGACTGGTCGGCGAGCGCGTCGAATCTGCCGTCGTCGTCCATTGCGTTGAAAGCCCGCGAATATCAGCAATTAGCGATTCCCGTCAACAAGGAAATGGAAATTTCTATGGCCCGCCTAAAGCTTACCGCCGCCGCGCTTCAGAACACGGTTCACCCGTCAGCTTCGGCAAACCTGTATCTCGACAACGGCGCGCCGAAGTCCGACCGCATCGTGGTTTTCGAATACAAGCTTGCGTCCGGCACGGAATGGATTTTCGACGGAACCGAGTTGACCGACGCCAACGGCAACGCGACGCACGCCATGATTGCCACGTTGGAGGATAACAGTTATCAAATCCGCGCGACCGCCGGCACCGTCGCGAACGGCCTGATCGAAATCATCAGCAACGGCGTTGGAGTGATCACCGACAAGCCCAATGAACGGCCGATCCTTCCGCCGTCCTACGACAAATGGATTGATACCGAGAAAGAAGGTAGTTACGGCTTCATCGGGTCGATGTTCATCACGCAAGGTGCAGCGGCCGGTTCGGCGCTCGGCACCATTCCGATGACCAACAGCCCGAAGCCCGGCCCCGCGTGGTCGTCCGATAGCCCGGATTTCCCGATTGATCCGGTCACCGGCGCGATTACGATGAACAACGCATCGAAAGCGGCCGGCACCTATTACCCGACCTTCACCGCATCGAATAGCGCCGGCTCGACAAGCATCACCGTTCCGATCGTCGTCGTTCCGTCAACCGGCCTGACCCGTACGTATTTCGTCGACCCGGTCAACGGTGACGACACGAACAACAACGGCAAGACGCCCGCCACTCCGTTCAAGACCTTTTCGAAGGCGAACGGTATTCGCGGCGCTGACGTGTTTTCGACATATACGATTTATCAAAAGCGCGGCACCGAACAAAGCAGCGCGGGAACGATGGTTTTCAACCTTCGCAATTATACGAACATCGGCGCATATGGTGATCCGTCCGCACCGGCTCCGCTGGTCAAGGCGACGGCGTCCGGTGCGTCGTGCATCGGAACGACCGTGTCGGGCACGCTGACCAATGTCAGCATCAAGGATCACCGCTTCAACTTCGTTTATCGCGGTATCGCCTTGACGGACGGCACCGGTTGCGCGTTCGTCCGACTTTCCTTTGAAAAGAACGTCGACTTCGGTAACGCGATCTATCTGCACGGATACACGAATTCGAACATCTATCATTGCACGCTCGCTGACGGCATCAACGGCGACGGCGTGTATTTACGTAAGTTCCGTACCGGCCGGGTTCGTTTCTGCAAGTTCGGCATTCCGTACGGCACCGGAGCGGACAACCTGCAAATCACGTCCGAACGCAAGAGCGGGATGCAGCCTTCCAACGTCGAAGTGTCCGACAACATCTTCCGGCATTCGGTCACGTCGAACGCGCTCAAAGGCAACTGCGTCATTGAAGACGCGACGAATTGTGTATTCCAGCGGAACGACTGCATCGGGAATTATTTCTGCTTGTCGCAGCTTTCCCGTTACGTGACCGTGCGCGACAACCTCCTGAAAGGCGCAAGCCTGAACGACAATTCGTTCGGTGTCGGCACCGGCGCGTTGGATCACACGAACGATTGTCGAATCATCTTCAACCGGATCGAAAACAATTACGTCGGCGTGGCTCTTTCGGGCTATGACGACCCGGACACGCCGCCCGGCTGGCAGCGCCTTGACTACGAAATCCTGTACAACACGTTCCGCAAGAACAAGGTGTTCGGCAAGCAGGACCGCCCGGCGACCGGCTTCATATCCGACAACGTGCTTGAACTGAACAACAGTTCAAGCATTCTCGGGAACGGCGGCGCGGGCGTCAGCTTCACGGCGTCGAACGGATCGGTCGTGAATCCTGATTATTCGACCTTCACGCGCGGCACGAACTTCACGAACGCGGCCGACACCGACAGCGACGCGGCGAAGCCGACGATTTCTGGAACGATGGTGGCGGGAACGACCGCGACGGTCGACGTCCCGACGATTGCCGGCGCGACTTCGGCGGTTCAATGGTTGATCAACGATCAGAAGTCCCCCGGCGCGACGGCGTTGACGTTCCTCTTGCCGGCCGATCAGCCGAATAATCCGAACATGCCGTCGTTCAACAACGCGCCGACCGTGTCGTGTGCGGTGATCTACACCTACGCTGACGGTCGGACGCTGATTGTGCCGGCACGCTATTCGAACGGCTGGACAACCGCCGCTATTTTGGCAGCATAA

Tertiary structure

PDB ID
53fe931d1a105ddf4b19e913d79d84fe5a651dec3c66e9c83c13698e7779d8d0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2555
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank