Protein

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Genbank accession
YP_009288845.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKQNLIVGQSVDDGSGDYLRKGGLKINNNFDDLYSELGDGSVPFAAGAWKTFKASPTGTTLNAKFGQAFAINTQAARVNVQLPKGTANDYNKVIKLRDVWSTWRLSPITVIPAQGDTLKGSASPKIFNTNFQDLELVYCAPGRWEYIENKTVDKLTNGNLSTVAKKSIIATAGQTDFLNIFDGVDYNEDSLNVYRRGNILYYGETSVMDKANADYGSPGTVAGQLVELNGKDIRLKVPCVEGEVITFETFLDGIGVYRSSYNKLAIQIRDSAQTTSQTIPGSIIVDNLATLRRITLDDMGVLPGVGVNPNSLEISLNGKELLEAGTAGLPLFYCEGAEGGYAEDCINNGGQWVNSNQDYRLEFDSTGINVEAIIFGEAFEDKDLLTVRWFNNNIGTTMNIDDIMAETDHVYMNAEQLVTLKNRIEYTNYDEPNQKNMRPVADDVMIKVNNIAAFFDVIYPIGTIYENAHNHANPADYMGFGVWKLYSQGRVTAGWNNDSSDPYFARNNNNLNENGQPSLTAGGTVGDLTFTLGKEHIPELMSRDKVLISDPEHGSVVIGGCQLDPDAQGPGYSKYREDTVAVNNGVVPNDITKIQPTITVYRWIRVG
Physico‐chemical
properties
protein length:607 AA
molecular weight: 66614,63530 Da
isoelectric point:4,69504
aromaticity:0,09226
hydropathy:-0,33410

Domains

Domains [InterPro]
IPR036240
STR
1–236
IPR036240 IPR054430 IPR053827
IPR034695
Unmapped
1–607
IPR034695
DC_2238
STR
1–590
DC_2238
IPR008987
ATT
2–146
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–41
G3DSA:1.20.5.960
YP_009288845.1
1 607
Architecture
ATT
STR
ATT
STR
ATT
ATT 1-146 | STR 147-160 | ATT 161-267 | STR 268-453 | ATT 454-606 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009288845.1
1 607
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,9794
Central domain 200 412 214 0,1526
C-terminal 413 607 194 0,8891
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-412
C-terminal
413-607

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM_KpV477
[NCBI] 		1852625 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Jiaodavirus
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009288845.1 [NCBI]
Genbank nucleotide accession
NC_031087 [NCBI]
CDS location
range 89458 -> 91281
strand +
CDS
ATGAAACAAAATTTAATAGTAGGCCAATCAGTAGATGATGGGTCTGGTGATTACCTCCGTAAAGGTGGTCTTAAAATTAATAACAACTTTGATGATTTATATTCAGAGTTAGGTGATGGTTCAGTTCCATTCGCAGCAGGTGCATGGAAAACTTTTAAAGCTAGCCCTACTGGAACTACTTTAAATGCTAAGTTTGGTCAGGCCTTTGCTATTAATACCCAGGCAGCAAGAGTTAACGTTCAGCTTCCAAAGGGTACAGCCAACGACTATAACAAAGTTATTAAACTTCGTGATGTTTGGTCAACCTGGCGATTAAGCCCAATCACAGTTATTCCTGCTCAAGGCGATACATTAAAGGGTTCAGCTTCTCCTAAAATTTTCAATACTAACTTCCAAGATTTGGAATTGGTTTATTGCGCCCCTGGCCGCTGGGAATATATTGAAAATAAAACAGTAGACAAGCTAACTAATGGCAACTTAAGTACTGTAGCGAAAAAATCAATTATTGCTACCGCCGGACAGACTGACTTTCTTAACATTTTCGATGGCGTAGATTATAACGAAGACTCACTTAACGTATATCGTCGTGGTAATATTTTATATTACGGTGAAACCAGCGTTATGGATAAAGCCAATGCTGATTACGGTTCTCCTGGAACGGTAGCGGGTCAATTGGTAGAATTAAACGGTAAAGACATTCGTTTAAAAGTTCCGTGCGTTGAAGGGGAAGTAATAACATTCGAAACCTTCTTAGATGGAATTGGTGTATATCGTTCTTCATACAACAAGTTAGCTATCCAGATACGAGATTCAGCCCAGACTACATCCCAGACGATTCCTGGGTCAATTATAGTAGATAACCTTGCTACTCTCCGCAGAATCACTCTGGATGACATGGGTGTACTTCCAGGCGTAGGGGTAAATCCTAACTCGCTTGAAATTTCATTGAACGGAAAGGAATTACTCGAAGCTGGAACTGCTGGTCTTCCTTTATTTTATTGCGAAGGCGCAGAAGGCGGATATGCAGAAGACTGTATAAACAACGGTGGTCAATGGGTAAATTCTAACCAAGATTACAGACTGGAATTTGACTCGACTGGTATTAACGTAGAAGCTATTATTTTTGGTGAAGCGTTCGAGGATAAAGACCTTCTTACTGTTCGTTGGTTCAACAACAACATCGGTACTACTATGAATATCGATGATATCATGGCAGAAACTGATCATGTGTATATGAATGCGGAGCAATTAGTAACTCTAAAAAATCGCATTGAATACACTAACTATGATGAACCGAATCAGAAAAATATGCGTCCTGTCGCTGATGATGTTATGATTAAAGTCAATAACATTGCAGCATTCTTTGACGTAATTTATCCGATTGGTACTATCTACGAAAACGCCCATAACCATGCAAACCCTGCCGATTACATGGGATTTGGTGTATGGAAGCTTTACTCTCAGGGTCGTGTTACTGCGGGTTGGAATAATGATTCATCTGACCCTTATTTTGCGCGTAACAATAATAACCTAAACGAAAACGGGCAACCATCGTTAACAGCAGGTGGAACAGTTGGTGATTTGACATTTACATTAGGAAAAGAACACATTCCTGAGTTAATGTCAAGGGACAAAGTTCTAATTTCAGACCCTGAACATGGCAGCGTAGTTATTGGCGGATGTCAATTAGACCCAGACGCGCAGGGACCAGGTTATTCTAAATACCGTGAAGACACTGTTGCAGTAAACAATGGTGTAGTTCCAAATGACATCACTAAAATTCAGCCAACAATCACCGTTTATCGTTGGATTAGGGTAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a099d85a9f30d5052c50c449b037e694e3d1b713383f156851c89a10f5f6e8e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6214
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Klebsiella pneumoniae bacteriophage vB_KpnM_KpV477 Komisarova,E.V., Krasilnikova,V.M., Kislichkina,A.A., Bogun,A.G. and Volozhantsev,N.V. 2017-09-14 — GenBank