Protein

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Genbank accession
AFX93507.1 [GenBank]
Protein name
putative pectate lyase
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence Phold
Probability 1,00
Protein sequence
MSQSISSIMQLPVNMNFNKVVMVGRYAGIAGTTINGPDVAITNNYRLVVEQVSVNTQTIYQRLEYRLSGTVRVFGRFGTNSTGSDPLGGTWTFTTWEEFATPANGFTTTATVKAGRLESTGQVVGTYVGSTGRVVAATSVEGATATFTGVVTCSSVNQTSDQNLKKDITEIPPELIAAAKSVSPKQYRLKSDDTGALHVGFMAQEVWDAIVAVGLNPEDYALIGQHEDEDGGKFFSINYTELMLLRSL
Physico‐chemical
properties
protein length:248 AA
molecular weight: 26656,64600 Da
isoelectric point:5,09678
aromaticity:0,08468
hydropathy:-0,07258

Domains

Domains [InterPro]
IPR036388
147–242
IPR036388
IPR030392
160–248
IPR030392
IPR030392
160–214
IPR030392
AFX93507.1
1 248
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage phiMAM1
[NCBI] 		1262513 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia sp.
[NCBI] 		616 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFX93507.1 [NCBI]
Genbank nucleotide accession
JX878496 [NCBI]
CDS location
range 37008 -> 37754
strand +
CDS
ATGAGCCAGTCAATTAGCAGTATCATGCAACTCCCGGTCAACATGAACTTCAACAAGGTTGTGATGGTCGGGCGCTATGCGGGGATAGCCGGGACGACAATCAATGGGCCAGACGTGGCCATCACCAACAACTATCGCCTGGTGGTTGAACAAGTCAGTGTAAACACACAGACGATCTATCAGCGCCTGGAGTACAGGTTGTCCGGCACGGTCAGGGTGTTTGGTCGCTTCGGCACCAACTCCACTGGCTCTGATCCTCTTGGTGGGACTTGGACGTTCACTACCTGGGAAGAATTTGCCACGCCAGCCAACGGCTTCACAACTACAGCAACAGTGAAAGCTGGGCGCTTGGAGTCTACGGGACAGGTGGTGGGGACGTATGTGGGTTCAACCGGGCGTGTGGTTGCAGCGACTTCTGTTGAAGGGGCGACGGCAACGTTCACTGGGGTGGTGACTTGTTCCTCAGTCAACCAGACTTCGGATCAGAACCTGAAGAAAGACATCACAGAGATACCACCAGAGCTGATTGCAGCGGCCAAATCCGTGTCTCCCAAGCAGTACCGTTTGAAGAGTGATGACACTGGCGCCCTGCATGTCGGGTTCATGGCACAAGAAGTTTGGGACGCCATTGTTGCTGTGGGGCTTAATCCAGAAGATTACGCGCTGATTGGCCAGCATGAGGACGAAGACGGCGGCAAATTCTTCTCCATTAATTATACTGAATTGATGTTGCTGCGCAGCCTCTGA

Tertiary structure

PDB ID
83ae353580980e6e29a324d2fab81ff5bc0b834f64c81dc6ac10039a745af028
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8273
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50